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[183086_at]

Description T04C4.1 /REP_DB=WormBase Gene ID /WP=CE28249 /TR=Q9TZ42 /GB=AAC68908.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 11      6grp_total > 44      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 120.9
(0.5)
P 		98.5
(-0.6)
A 		48.1
(-3)
P 		173.7
(3)
P 		126
B 58.2
(-1.9)
A 		49
(-3)
A 		93.5
(2.3)
A 		99.5
(3)
P 		51
C 64
(-2.1)
P 		71.9
(-1.5)
P 		51.8
(-3)
A 		131.3
(3)
P 		80
avr 81
(-1.6) 		73.1
(-2.3) 		64.5
(-3) 		134.8
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 66.1
(0)
P 		72.6
(1.1)
A 		84.5
(3)
A 		47.2
(-3)
A 		81.8
(2.6)
A 		82.7
(2.7)
M 		37
B 86.8
(2.7)
P 		77.4
(0.1)
P 		88
(3)
A 		66.1
(-3)
P 		75.5
(-0.4)
M 		84.5
(2)
P 		22
C 78.2
(3)
P 		73.3
(1.8)
P 		56.1
(-2.3)
A 		75.6
(2.4)
A 		65.6
(-0)
P 		53.3
(-3)
P 		25
avr 77
(3) 		74.4
(1.9) 		76.2
(2.7) 		63
(-3) 		74.3
(1.8) 		73.5
(1.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 44
(3)
P 		21.4
(-1.3)
A 		12.6
(-3)
P 		25.4
(-0.6)
P 		31
B 18.6
(1.1)
A 		12.1
(-3)
A 		21.7
(3)
A 		21.2
(2.7)
P 		10
C 21.2
(1.7)
P 		20.7
(0.9)
P 		18.1
(-3)
A 		22.1
(3)
P 		4
avr 27.9
(3) 		18.1
(-2.7) 		17.5
(-3) 		22.9
(0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.2
(-2.9)
P 		25.8
(3)
A 		18.4
(-0.2)
A 		12
(-3)
A 		24.7
(2.5)
A 		20.1
(0.5)
M 		14
B 30.2
(2.4)
P 		25.8
(0.6)
P 		21.4
(-1.3)
A 		17.5
(-3)
P 		30.7
(2.7)
M 		31.5
(3)
P 		14
C 29
(3)
P 		22.4
(0.3)
P 		14.3
(-3)
A 		15.2
(-2.6)
A 		21.2
(-0.2)
P 		17.8
(-1.6)
P 		15
avr 23.8
(2) 		24.7
(2.5) 		18
(-1.2) 		14.9
(-3) 		25.5
(3) 		23.1
(1.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10638
Sequence Type Exemplar sequence
Representative Public ID T04C4.1 NCBI
Target Description T04C4.1 /REP_DB=WormBase Gene ID /WP=CE28249 /TR=Q9TZ42 /GB=AAC68908.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028186(9), NM_001028187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028186 NCBI Caenorhabditis elegans T04C4.1a (T04C4.1) mRNA, complete cds. 9/11 None
NM_001028187 NCBI Caenorhabditis elegans T04C4.1b (T04C4.1) mRNA, complete cds. 11/11 None
T04C4.1a ENSEMBL cdna:known chromosome:CEL140:IV:2222829:2235710:1 gene:T04C4.1 9/11 A 
T04C4.1b ENSEMBL cdna:known chromosome:CEL140:IV:2223847:2234037:1 gene:T04C4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036839 4/11 Cross Hyb Matching Probes None
GENEFINDER00000036841 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2222406-2234043(+) 96.04 100.0
Public Domain and Genome References
Ensembl T04C4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023357 T04C4.1a [Caenorhabditis elegans] 0.0
blast NP_001023358 T04C4.1b [Caenorhabditis elegans] 0.0
blast AAZ32794 Hypothetical protein T04C4.1a [Caenorhabditis elegans] 0.0
blast T33656 hypothetical protein T04C4.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:183086_AT
cagcggccgaactctgaaggactcggtagatcaatgttcgccggccctcttaacaattat
tgctcgcattttgtactgtcggctgtgcagaagactgataccaatatgcctgaagtttat
tctagaatgttcgacgaagtccggtgtaccgattttccgtgtcaccgttcggcaactgct
acgccatcacaatcgacgtcatcaatgtgtgatccggcaatgaatccggaaaatgtgcta
atcattgcggatatcgagcaactgacagtaaaagtgctctcaacagaaggatcagatgaa
gtgacgtcaccatccgaatcaattgtcgcaatgttggaacaatttgttggaattcataat
gctgtaccggcgaatgccgagtttttagtcggaattattgaggattcattggctcatatt
gttggaaaaagtttgacacttgtcgaacttgtcagaagtgatcaaacggttaggattcag
ggctcagagagagccaaaaaatcgaaaattttagcaaaaattgagatacttttggctgtt
tgccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGGCCGAACTCTGAAGGACTCG 330 203 2065 Antisense
TCGGTAGATCAATGTTCGCCGGCCC 574 605 2087 Antisense
CGGCCCTCTTAACAATTATTGCTCG 695 239 2106 Antisense
ATTGCTCGCATTTTGTACTGTCGGC 337 7 2123 Antisense
TGTTCGACGAAGTCCGGTGTACCGA 244 561 2192 Antisense
GGTGTACCGATTTTCCGTGTCACCG 181 501 2207 Antisense
CTACGCCATCACAATCGACGTCATC 117 227 2243 Antisense
GACGTCACCATCCGAATCAATTGTC 11 379 2367 Antisense
CATAATGCTGTACCGGCGAATGCCG 360 213 2419 Antisense
AACGGTTAGGATTCAGGGCTCAGAG 12 145 2529 Antisense
GAGATACTTTTGGCTGTTTGCCCCG 128 395 2587 Antisense
Sequence Source Affymetrix Proprietary Database