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[183085_at]

Description W05H7.4 /REP_DB=WormBase Gene ID /WP=CE14654 /TR=O02174 /GB=AAB52864.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 28      4grp_high_8_8 > 03      6grp_total > 17      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 241.8
(-1.6)
P 		176.3
(-3)
P 		188.8
(-2.7)
P 		454.3
(3)
P 		278
B 290.6
(3)
P 		175.3
(-3)
A 		205.8
(-1.4)
P 		277.9
(2.3)
P 		115
C 274
(1.7)
P 		185.7
(-2.1)
P 		165.1
(-3)
P 		304
(3)
P 		139
avr 268.8
(0.2) 		179.1
(-3) 		186.6
(-2.7) 		345.4
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 332
(3)
P 		240.2
(-0)
P 		258.3
(0.6)
P 		149.3
(-3)
P 		238.4
(-0.1)
P 		261.3
(0.7)
P 		183
B 301.8
(3)
P 		282.4
(2.3)
P 		142.4
(-3)
P 		183.5
(-1.5)
P 		166.2
(-2.1)
P 		182.4
(-1.5)
P 		159
C 378.7
(3)
P 		184.3
(-1.9)
P 		200.5
(-1.5)
P 		168.1
(-2.3)
A 		239.1
(-0.5)
P 		141.8
(-3)
P 		237
avr 337.5
(3) 		235.6
(-0.6) 		200.4
(-1.8) 		167
(-3) 		214.6
(-1.3) 		195.2
(-2) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 88
(3)
P 		38.3
(-3)
P 		49.3
(-1.7)
P 		66.5
(0.4)
P 		50
B 92.7
(3)
P 		43.3
(-3)
A 		47.7
(-2.5)
P 		59.2
(-1.1)
P 		49
C 90.7
(3)
P 		53.4
(-2.7)
P 		57.6
(-2)
P 		51.3
(-3)
P 		39
avr 90.5
(3) 		45
(-3) 		51.5
(-2.1) 		59
(-1.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 61.2
(-0.1)
P 		85.4
(3)
P 		56.2
(-0.7)
P 		37.9
(-3)
P 		71.9
(1.3)
P 		63.6
(0.2)
P 		48
B 105
(3)
P 		94
(2.1)
P 		34.6
(-3)
P 		48.6
(-1.8)
P 		67.5
(-0.2)
P 		68
(-0.2)
P 		70
C 140.3
(3)
P 		56.2
(-1.7)
P 		51
(-2)
P 		33.8
(-3)
A 		77.4
(-0.5)
P 		47.5
(-2.2)
P 		107
avr 102.2
(3) 		78.5
(0.7) 		47.3
(-2.3) 		40.1
(-3) 		72.3
(0.1) 		59.7
(-1.1) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18077
Sequence Type Exemplar sequence
Representative Public ID W05H7.4 NCBI
Target Description W05H7.4 /REP_DB=WormBase Gene ID /WP=CE14654 /TR=O02174 /GB=AAB52864.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029771(11), NM_171627(11), NM_171628(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029771 NCBI Caenorhabditis elegans W05H7.4e (W05H7.4) mRNA, complete cds. 11/11 None
NM_171627 NCBI Caenorhabditis elegans W05H7.4b (W05H7.4) mRNA, complete cds. 11/11 None
NM_171628 NCBI Caenorhabditis elegans W05H7.4a (W05H7.4) mRNA, complete cds. 11/11 None
SNAP00000043339 ENSEMBL cdna:SNAP chromosome:CEL140:X:1440626:1445592:-1 11/11 None
GENEFINDER00000043342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1440626:1448616:-1 11/11 None
W05H7.4a ENSEMBL cdna:known chromosome:CEL140:X:1440368:1443390:-1 gene:W05H7.4 11/11 None
W05H7.4b ENSEMBL cdna:known chromosome:CEL140:X:1440368:1446638:-1 gene:W05H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180479 5 3 NM_001029770 174103_at (11)
NM_001029771 183085_at (11)
NM_171627 183085_at (11)
NM_171628 183085_at (11)
NM_171629 183398_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1440625-1443390(-) 100.0 100.0
Public Domain and Genome References
Ensembl W05H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 0.0
blast NP_741719 W05H7.4b [Caenorhabditis elegans] gb|AAQ01521.1| Hypothetical protein W05H7.4b [Caenorhabditis elegans] 0.0
blast NP_741720 W05H7.4a [Caenorhabditis elegans] gb|AAQ01520.1| Hypothetical protein W05H7.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:183085_AT
gagccatgtgtctactttatcagccgcccgggtggatgtaatcggggagatcagtgcaga
tttattcatgacgaggagatgagacgtcaaaagatggcagagctcccaccacgcggtcca
aatcatcaccacgacaacttccgaggtggccgaggccgcggattccgtggaggctacaac
aatcgcaacaactacaacaaccaccacgaccgcgactttagagacaatgcaggcggaaac
cgtggccgatttggcgacactgaaggattccgtggagcacgatatgctcgtggaggcttt
gctcctcggaacaactcgagattcgaccagaagccagcgtacaatgatgatggcggtcat
ctaggatccccaaatgcacatggatcccagtatcaggatcccgttccgactaagagagcc
cgtgtcagtaggtttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCATGTGTCTACTTTATCAGCC 553 385 1300 Antisense
TTTATCAGCCGCCCGGGTGGATGTA 424 659 1315 Antisense
CAAATCATCACCACGACAACTTCCG 473 193 1418 Antisense
GAGGCTACAACAATCGCAACAACTA 7 407 1469 Antisense
ACCACGACCGCGACTTTAGAGACAA 606 83 1502 Antisense
GAAACCGTGGCCGATTTGGCGACAC 119 357 1535 Antisense
GCTTTGCTCCTCGGAACAACTCGAG 208 305 1595 Antisense
ATTCGACCAGAAGCCAGCGTACAAT 228 9 1620 Antisense
TGATGGCGGTCATCTAGGATCCCCA 328 563 1647 Antisense
AGGATCCCGTTCCGACTAAGAGAGC 144 53 1694 Antisense
GAGAGCCCGTGTCAGTAGGTTTGAT 608 393 1713 Antisense
Sequence Source Affymetrix Proprietary Database