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[183084_at]

Description C54D10.8 /REP_DB=WormBase Gene ID /WP=CE05504 /TR=Q18826 /GB=CAA99798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 93      6grp_total > 84      4grp_total > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 13.5
(-3)
A 		20.6
(-2.5)
A 		27.3
(-2.1)
A 		107.2
(3)
P 		94
B 31.1
(-0.7)
A 		4.3
(-3)
A 		17.3
(-1.9)
A 		73.4
(3)
P 		69
C 31.8
(-1.9)
A 		22.1
(-2.4)
A 		7.4
(-3)
A 		143.5
(3)
P 		136
avr 25.5
(-2.4) 		15.7
(-3) 		17.3
(-2.9) 		108
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 20.6
(-3)
A 		52.2
(-1.7)
P 		104.4
(0.4)
P 		160.3
(2.7)
P 		167.1
(3)
P 		161
(2.8)
P 		147
B 50.7
(-2.4)
P 		38
(-3)
P 		61.2
(-1.9)
P 		101.6
(-0)
P 		165.8
(3)
P 		163.3
(2.9)
P 		128
C 36.1
(-3)
P 		59.4
(-2)
P 		78.2
(-1.2)
P 		166
(2.6)
P 		175.8
(3)
P 		145.3
(1.7)
P 		140
avr 35.8
(-3) 		49.9
(-2.4) 		81.3
(-1) 		142.6
(1.8) 		169.6
(3) 		156.5
(2.4) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.9
(-2.8)
A 		4.5
(-3)
A 		7.1
(-1.6)
A 		15.7
(3)
P 		11
B 9.9
(0.6)
A 		1.1
(-3)
A 		4
(-1.8)
A 		15.6
(3)
P 		15
C 10.5
(-0.8)
A 		6.3
(-2)
A 		2.6
(-3)
A 		24.2
(3)
P 		22
avr 8.4
(-1.2) 		4
(-3) 		4.6
(-2.8) 		18.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 3.8
(-3)
A 		18.6
(-1.1)
P 		22.7
(-0.6)
P 		40.7
(1.8)
P 		50.4
(3)
P 		39.2
(1.6)
P 		47
B 17.6
(-2.5)
P 		12.7
(-3)
P 		14.9
(-2.8)
P 		26.9
(-1.4)
P 		67.4
(3)
P 		60.9
(2.3)
P 		55
C 13.4
(-3)
P 		18.1
(-2.4)
P 		19.9
(-2.1)
P 		33.4
(-0.2)
P 		56.9
(3)
P 		48.6
(1.9)
P 		44
avr 11.6
(-3) 		16.5
(-2.4) 		19.2
(-2) 		33.7
(-0.2) 		58.2
(3) 		49.6
(1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13666
Sequence Type Exemplar sequence
Representative Public ID C54D10.8 NCBI
Target Description C54D10.8 /REP_DB=WormBase Gene ID /WP=CE05504 /TR=Q18826 /GB=CAA99798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073720 NCBI Caenorhabditis elegans C54D10.8 (C54D10.8) mRNA, complete cds. 11/11 None
SNAP00000038026 ENSEMBL cdna:SNAP chromosome:CEL140:V:12447891:12449076:-1 11/11 None
GENEFINDER00000038035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12447891:12449544:-1 11/11 None
C54D10.8 ENSEMBL cdna:known chromosome:CEL140:V:12447772:12449254:-1 gene:C54D10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12447890-12449274(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D10.8
Entrez Gene 183785 Entrez gene
SwissProt Q18826 EMBL-EBI
WormBase CE35439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99798 Hypothetical protein C54D10.8 [Caenorhabditis elegans] ref|NP_506121.2| C54D10.8 [Caenorhabditis elegans] 1.0E-159
blast CAA99798 Hypothetical protein C54D10.8 [Caenorhabditis elegans] ref|NP_506121.2| C54D10.8 [Caenorhabditis elegans] 1.0E-158
blast CAA99798 Hypothetical protein C54D10.8 [Caenorhabditis elegans] ref|NP_506121.2| C54D10.8 [Caenorhabditis elegans] 1.0E-137
blast CAE75489 Hypothetical protein CBG23493 [Caenorhabditis briggsae] 5.0E-60
blast CAE75489 Hypothetical protein CBG23493 [Caenorhabditis briggsae] 2.0E-58
blast CAE75489 Hypothetical protein CBG23493 [Caenorhabditis briggsae] 3.0E-55
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 1.0E-23
blast AAB52322 Hypothetical protein W08A12.4 [Caenorhabditis elegans] ref|NP_504026.1| W08A12.4 [Caenorhabditis elegans] 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183084_AT
aagactttgctgaacaggatgccaatagaaaacttgaaattctagcgcaagaagaaaggg
ctcaggagagacttcgtgaaattgaagatcagttggcaagagacttggaagaattgagaa
gatgtgatcaacagagacgacaggaaatgaatgaacaaatggaaaatattcgaagactat
tacaaatgaaaatttggaatgacgtcattgaatctaattggacaaaacggttaaactcgt
tgaggtcttcgaataaggacgttgaaagggcttacaatcaaatcagaagaagttcgaaaa
actatcatgaaactcacgcaaagcatctactgttagcagttgttaatcagaaaagtatta
tggacaatgaaaaatacgaaatggagaagttgcatgctgaacacgaaaagccatttttac
tagaaatcaagggggcagttgaagaagttagtgctgaatgtgatcgattgagttatgttc
tgcagaatgaaccgggcaacgcaaaaagaattgaagactgctattcagttcttttgcaag
caaccaatgcgattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTTTGCTGAACAGGATGCCAA 249 153 461 Antisense
AAGGGCTCAGGAGAGACTTCGTGAA 148 159 516 Antisense
GTTAAACTCGTTGAGGTCTTCGAAT 317 235 690 Antisense
AGGACGTTGAAAGGGCTTACAATCA 336 17 716 Antisense
GAAACTCACGCAAAGCATCTACTGT 461 357 769 Antisense
GAGAAGTTGCATGCTGAACACGAAA 610 391 844 Antisense
GTTAGTGCTGAATGTGATCGATTGA 33 445 907 Antisense
GATCGATTGAGTTATGTTCTGCAGA 492 417 922 Antisense
GCAGAATGAACCGGGCAACGCAAAA 334 311 942 Antisense
GAAGACTGCTATTCAGTTCTTTTGC 570 339 973 Antisense
TTTGCAAGCAACCAATGCGATTCCA 212 669 993 Antisense
Sequence Source Affymetrix Proprietary Database