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[183083_at]

Description C15C7.1 /REP_DB=WormBase Gene ID /WP=CE27066 /TR=Q18014 /GB=AAK39171.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 33      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 292.8
(-3)
P 		548.1
(3)
P 		469.2
(1.1)
P 		475.2
(1.3)
P 		255
B 331.9
(-3)
P 		475.4
(1)
P 		546.4
(3)
P 		486.9
(1.3)
P 		215
C 324.9
(-3)
P 		459.6
(2.4)
P 		473.8
(3)
P 		436.1
(1.5)
P 		149
avr 316.5
(-3) 		494.4
(2.9) 		496.5
(3) 		466.1
(2) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 245.2
(-2.7)
P 		364.3
(2)
P 		390.7
(3)
P 		384.6
(2.8)
P 		237.2
(-3)
P 		259.1
(-2.1)
P 		154
B 207.3
(-3)
P 		394.9
(-0.1)
P 		600.6
(3)
P 		336.4
(-1)
P 		289
(-1.8)
P 		209.6
(-3)
P 		393
C 229.6
(-3)
P 		427.8
(3)
P 		301.8
(-0.8)
P 		411.9
(2.5)
P 		291.5
(-1.1)
P 		363.1
(1)
P 		198
avr 227.4
(-3) 		395.7
(2) 		431
(3) 		377.6
(1.4) 		272.6
(-1.7) 		277.3
(-1.5) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 106.6
(1.2)
P 		119
(2.6)
P 		122.7
(3)
P 		69.6
(-3)
P 		53
B 105.9
(-2.4)
P 		117.4
(0.6)
P 		126.6
(3)
P 		103.8
(-3)
P 		23
C 107.5
(-0.8)
P 		132.1
(0.8)
P 		165.1
(3)
P 		73.5
(-3)
P 		92
avr 106.7
(-0.4) 		122.8
(1.4) 		138.1
(3) 		82.3
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 45.2
(-3)
P 		129.6
(3)
P 		85.1
(-0.2)
P 		97.5
(0.7)
P 		71.6
(-1.1)
P 		63.1
(-1.7)
P 		84
B 72.1
(-3)
P 		131.5
(1.8)
P 		145.8
(3)
P 		89.1
(-1.6)
P 		117.4
(0.7)
P 		78.1
(-2.5)
P 		74
C 85.1
(-2.1)
P 		130.5
(3)
P 		76.8
(-3)
P 		82.8
(-2.3)
P 		94.3
(-1)
P 		121.6
(2)
P 		54
avr 67.5
(-3) 		130.5
(3) 		102.6
(0.3) 		89.8
(-0.9) 		94.4
(-0.4) 		87.6
(-1.1) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18071
Sequence Type Exemplar sequence
Representative Public ID C15C7.1 NCBI
Target Description C15C7.1 /REP_DB=WormBase Gene ID /WP=CE27066 /TR=Q18014 /GB=AAK39171.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171649 NCBI Caenorhabditis elegans C15C7.7 (C15C7.7) mRNA, complete cds. 11/11 A 
SNAP00000025248 ENSEMBL cdna:SNAP chromosome:CEL140:X:3165844:3167483:1 11/11 None
GENEFINDER00000025255 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3165844:3167483:1 11/11 None
C15C7.7 ENSEMBL cdna:known chromosome:CEL140:X:3165825:3167562:1 gene:C15C7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3164527-3167484(+) 97.89 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C7.7
Entrez Gene 180607 Entrez gene
SwissProt Q18014 EMBL-EBI
WormBase CE36786 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16883.1.S1_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
CANINE_2:CFA.16883.1.S1_S_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
CANINE_2:CFAAFFX.11672.1.S1_AT similar to GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) cfa
DROSOPHILA_2:1631674_AT O-fucosyltransferase 1 dm
DROSGENOME1:141670_AT O-fucosyltransferase 1 dm
CHICKEN:GGA.5100.1.S1_S_AT protein O-fucosyltransferase 1 gga
CHICKEN:GGAAFFX.12455.1.S1_AT protein O-fucosyltransferase 1 gga
HG-U133_PLUS_2:210433_AT protein O-fucosyltransferase 1 hs
HG-U133A:210433_AT protein O-fucosyltransferase 1 hs
HG-U133A_2:210433_AT protein O-fucosyltransferase 1 hs
HU35KSUBA:D80002_AT protein O-fucosyltransferase 1 hs
HUGENEFL:D80002_AT protein O-fucosyltransferase 1 hs
HU35KSUBA:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBB:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBD:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HUGENEFL:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HC-G110:HUM_ALU_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:RC_T91958_F_AT protein O-fucosyltransferase 1 hs
HU35KSUBC:RC_AA430163_S_AT protein O-fucosyltransferase 1 hs
HU35KSUBD:RC_AA405654_S_AT protein O-fucosyltransferase 1 hs
U133_X3P:G12653608_3P_AT protein O-fucosyltransferase 1 hs
U133_X3P:HS.178292.0.S1_3P_X_AT protein O-fucosyltransferase 1 hs
U133_X3P:HS.178292.0.S1_3P_AT protein O-fucosyltransferase 1 hs
U133_X3P:212349_3P_AT protein O-fucosyltransferase 1 hs
HG-U133A_2:212349_AT protein O-fucosyltransferase 1 hs
HG-U133_PLUS_2:212349_AT protein O-fucosyltransferase 1 hs
HG-U133A:212349_AT protein O-fucosyltransferase 1 hs
HG-U95AV2:41150_R_AT protein O-fucosyltransferase 1 hs
HG-U95E:67976_AT Protein O-fucosyltransferase 1 hs
MOUSE430_2:1450137_AT protein O-fucosyltransferase 1 mm
MOE430A:1450137_AT protein O-fucosyltransferase 1 mm
MOUSE430A_2:1450137_AT protein O-fucosyltransferase 1 mm
MOE430A:1456323_AT protein O-fucosyltransferase 1 mm
MOUSE430A_2:1456323_AT protein O-fucosyltransferase 1 mm
MOUSE430_2:1456323_AT protein O-fucosyltransferase 1 mm
MG-U74CV2:133811_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MOE430B:1443881_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MOUSE430_2:1443881_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
MU19KSUBC:TC41007_AT Protein O-fucosyltransferase 1 (Pofut1), mRNA mm
RAE230B:1380372_AT Protein O-fucosyltransferase 1 rn
RAT230_2:1380372_AT Protein O-fucosyltransferase 1 rn
Protein Similarities
Method ID Description E-Value
blast AAM51514 Hypothetical protein C15C7.7 [Caenorhabditis elegans] ref|NP_741744.2| C15C7.7 [Caenorhabditis elegans] sp|Q18014|OFUT1_CAEEL Putative GDP-fucose protein O-fucosyltransferase 1 precursor (Peptide-O-fucosyltransferase) (O-FucT-1) 0.0
blast CAH40833 protein-O-fucosyltransferase 1 [Caenorhabditis briggsae] 0.0
blast CAE68388 Hypothetical protein CBG14147 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183083_AT
attgatgtttcatttgttggcgatgagtatttcggagatattcctggaggattcgatttg
aatcaaatgggaagcagaaagaaatggctagaaaagtttccgtcggaagagtaccccgtt
ttggcattttccagtgctccagctccatttccttccaaaggaaaagtctggtctattcag
aaatatttaagatggtcctcacgaattaccgaacaagccaagaaattcatttcggccaac
ttggcaaaaccttttgtcgctgttcatttaaggaatgacgctgattgggtacgagtttgt
gagcacattgatacaactacgaatcggccattgtttgcctcggaacagtgtcttggcgag
gggcatcatctgggcacacttaccaaagaaatatgctcaccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATGTTTCATTTGTTGGCGATG 262 5 817 Antisense
TCGGAAGAGTACCCCGTTTTGGCAT 309 599 919 Antisense
GATGGTCCTCACGAATTACCGAACA 389 407 1007 Antisense
GAAATTCATTTCGGCCAACTTGGCA 23 363 1038 Antisense
GCAAAACCTTTTGTCGCTGTTCATT 185 319 1060 Antisense
GAATGACGCTGATTGGGTACGAGTT 445 327 1089 Antisense
ACGAATCGGCCATTGTTTGCCTCGG 303 91 1135 Antisense
GTTTGCCTCGGAACAGTGTCTTGGC 321 451 1149 Antisense
AGTGTCTTGGCGAGGGGCATCATCT 408 59 1163 Antisense
CATCATCTGGGCACACTTACCAAAG 416 213 1180 Antisense
TACCAAAGAAATATGCTCACCGAGC 572 649 1197 Antisense
Sequence Source Affymetrix Proprietary Database