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[183082_s_at]

Description T13H2.4 /REP_DB=WormBase Gene ID /WP=CE04951 /TR=Q22465 /GB=AAB52495.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 1433.3
(3)
P 		832
(-1.6)
P 		644.2
(-3)
P 		816.9
(-1.7)
P 		789
B 1362.9
(3)
P 		731.5
(-2.1)
P 		627.1
(-3)
P 		981
(-0.1)
P 		736
C 1331.8
(3)
P 		775.1
(-2.6)
P 		732.5
(-3)
P 		807.5
(-2.2)
P 		599
avr 1376
(3) 		779.5
(-2.1) 		667.9
(-3) 		868.5
(-1.3) 		708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 946
1 2 3 4 5 6 range
A 1194.3
(2.2)
P 		1308.3
(3)
P 		484.6
(-3)
P 		697.2
(-1.5)
P 		579.9
(-2.3)
P 		979.5
(0.6)
P 		824
B 1268.5
(3)
P 		963.6
(0.6)
P 		678.5
(-1.7)
P 		569.2
(-2.6)
P 		520.3
(-3)
P 		761.9
(-1.1)
P 		748
C 1430.1
(3)
P 		888.2
(-0.7)
P 		842.7
(-1)
P 		556.6
(-3)
P 		781.8
(-1.5)
P 		817.7
(-1.2)
P 		874
avr 1297.6
(3) 		1053.4
(0.9) 		668.6
(-2.5) 		607.7
(-3) 		627.3
(-2.8) 		853
(-0.9) 		690
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 521.9
(3)
P 		180.6
(-2.1)
P 		168.4
(-2.3)
P 		119.6
(-3)
P 		402
B 434.6
(3)
P 		180.7
(-2.3)
P 		145.3
(-3)
P 		209.1
(-1.7)
P 		289
C 440.8
(3)
P 		222.9
(-1.3)
P 		255.3
(-0.7)
P 		136.2
(-3)
P 		305
avr 465.8
(3) 		194.7
(-2.2) 		189.7
(-2.3) 		155
(-3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 425
1 2 3 4 5 6 range
A 220.2
(-1.1)
P 		465.3
(3)
P 		105.5
(-3)
P 		176.8
(-1.8)
P 		175
(-1.8)
P 		238.5
(-0.8)
P 		360
B 441.4
(3)
P 		320.7
(0.5)
P 		164.8
(-2.7)
P 		150.8
(-3)
P 		211.4
(-1.7)
P 		284.1
(-0.2)
P 		291
C 530.1
(3)
P 		271
(-0.7)
P 		214.5
(-1.5)
P 		111.9
(-3)
P 		253
(-1)
P 		273.7
(-0.7)
P 		418
avr 397.2
(3) 		352.3
(1.9) 		161.6
(-2.6) 		146.5
(-3) 		213.1
(-1.4) 		265.4
(-0.2) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183082_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17017
Sequence Type Exemplar sequence
Representative Public ID T13H2.4 NCBI
Target Description T13H2.4 /REP_DB=WormBase Gene ID /WP=CE04951 /TR=Q22465 /GB=AAB52495.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171672 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-65) (pqn-65) mRNA, complete cds. 11/11 None
GENEFINDER00000044521 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4610198:4620394:-1 11/11 None
SNAP00000044517 ENSEMBL cdna:SNAP chromosome:CEL140:X:4611010:4616513:-1 11/11 None
T13H2.4a ENSEMBL cdna:known chromosome:CEL140:X:4610897:4620394:-1 gene:T13H2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180734 2 1 NM_171672 183082_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4611010-4620395(-) 99.62 100.0
Public Domain and Genome References
Ensembl T13H2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741772 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-65) [Caenorhabditis elegans] gb|AAL56623.1| Prion-like-(q/n-rich)-domain-bearing protein protein 65, isoform a [Caenorhabditis elegans] 0.0
blast T16871 hypothetical protein T13H2.4 - Caenorhabditis elegans 0.0
blast NP_741773 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-65) [Caenorhabditis elegans] gb|AAL56624.1| Prion-like-(q/n-rich)-domain-bearing protein protein 65, isoform b [Caenorhabditis elegans] 0.0
blast NP_741773 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-65) [Caenorhabditis elegans] gb|AAL56624.1| Prion-like-(q/n-rich)-domain-bearing protein protein 65, isoform b [Caenorhabditis elegans] 6.0E-44
Sequence
Target Sequence 
>C. ELEGANS:183082_S_AT
cgcttctcctgcacaaggtacatcttcgggacagtcgtcgtcaagcggaatgcaatctca
atcactttccatcacaactggaatgagctcatcaagctcatcgccaccagctagtgattt
tgatatttcaactcatctcatcacaccaccacaagaacactcatctccactcaccactcc
accgatcatcaatcatgaatatgttcaacaagtatctagcccagttgacatattctctca
accatcaacgtctgaacctggcccatcttccagaccaattcgaacaggtgtacaccatag
ggaagaagccttgaatgaggacgacaacggctcgccaattctgtatgatgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTCTCCTGCACAAGGTACATCT 402 255 6033 Antisense
AAGGTACATCTTCGGGACAGTCGTC 646 159 6047 Antisense
GGACAGTCGTCGTCAAGCGGAATGC 377 525 6061 Antisense
AGCGGAATGCAATCTCAATCACTTT 545 81 6076 Antisense
GATATTTCAACTCATCTCATCACAC 413 427 6154 Antisense
TCTAGCCCAGTTGACATATTCTCTC 472 613 6247 Antisense
ACATATTCTCTCAACCATCAACGTC 427 105 6260 Antisense
CAACCATCAACGTCTGAACCTGGCC 205 187 6271 Antisense
CCATCTTCCAGACCAATTCGAACAG 317 271 6295 Antisense
TGAATGAGGACGACAACGGCTCGCC 404 575 6344 Antisense
GGCTCGCCAATTCTGTATGATGACC 250 539 6361 Antisense
Sequence Source Affymetrix Proprietary Database