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[183081_at]

Description F46F5.7 /REP_DB=WormBase Gene ID /WP=CE19423 /TR=Q9TXY2 /GB=AAC78186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 5.2
(-2.8)
A 		3
(-3)
A 		3.4
(-3)
A 		75.5
(3)
A 		73
B 6.3
(1.4)
A 		7.3
(3)
A 		5.3
(-0.2)
A 		3.6
(-3)
A 		4
C 3.4
(-3)
A 		4.1
(-2.9)
A 		6.1
(-2.7)
A 		64.8
(3)
A 		61
avr 5
(-3) 		4.8
(-3) 		4.9
(-3) 		48
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-2.8)
A 		4.9
(-2.2)
A 		15.4
(3)
A 		3.2
(-3)
A 		7.8
(-0.7)
A 		3.6
(-2.8)
A 		12
B 6.8
(1.1)
A 		2.6
(-2.6)
A 		5.9
(0.3)
A 		2.9
(-2.3)
A 		9
(3)
A 		2.1
(-3)
A 		7
C 6.8
(-0.5)
A 		9.5
(0.9)
A 		5.3
(-1.3)
A 		13.4
(3)
A 		2.1
(-3)
A 		3.5
(-2.3)
A 		11
avr 5.7
(-0.3) 		5.7
(-0.3) 		8.9
(3) 		6.5
(0.5) 		6.3
(0.3) 		3.1
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.9
(-2.3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		11.1
(3)
A 		11
B 2
(3)
A 		1.8
(2)
A 		1.2
(-1)
A 		0.8
(-3)
A 		1
C 1.1
(-3)
A 		1.2
(-2.9)
A 		2.1
(-2.4)
A 		10.9
(3)
A 		10
avr 1.7
(-2.5) 		1.2
(-3) 		1.4
(-2.8) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.8
(-0.5)
A 		3.3
(3)
A 		0.8
(-2.8)
A 		2.3
(0.7)
A 		0.9
(-2.5)
A 		3
B 2.4
(0.3)
A 		0.9
(-2.8)
A 		1.4
(-1.8)
A 		0.8
(-3)
A 		3.7
(3)
A 		0.8
(-3)
A 		3
C 2.5
(1.9)
A 		2.9
(3)
A 		1.3
(-1.4)
A 		2.7
(2.5)
A 		0.7
(-3)
A 		1.2
(-1.6)
A 		2
avr 1.9
(1.5) 		1.9
(1.5) 		2
(2) 		1.4
(-1) 		2.2
(3) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5209
Sequence Type Exemplar sequence
Representative Public ID F46F5.7 NCBI
Target Description F46F5.7 /REP_DB=WormBase Gene ID /WP=CE19423 /TR=Q9TXY2 /GB=AAC78186.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061419 NCBI Caenorhabditis elegans F46F5.7 (F46F5.7) mRNA, complete cds. 11/11 None
SNAP00000029524 ENSEMBL cdna:SNAP chromosome:CEL140:II:818663:820253:-1 11/11 None
GENEFINDER00000029539 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:818663:820442:-1 11/11 None
F46F5.7 ENSEMBL cdna:known chromosome:CEL140:II:818663:820525:-1 gene:F46F5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:818662-820525(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.7
Entrez Gene 185860 Entrez gene
SwissProt Q9TXY2 EMBL-EBI
WormBase CE19423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78186 Hypothetical protein F46F5.7 [Caenorhabditis elegans] ref|NP_493820.1| F46F5.7 [Caenorhabditis elegans] 0.0
blast NP_505002 T05B11.4 [Caenorhabditis elegans] gb|AAB37068.1| Hypothetical protein T05B11.4 [Caenorhabditis elegans] 0.0
blast CAE73193 Hypothetical protein CBG20594 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.6E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493820.1 1 13-32
F46F5.7 1 13-32
GENEFINDER00000029539 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:183081_AT
aatggttagtattgcggattgcttaatatggtcccgcggagagacaaaatggaccatctt
cgctgacctagacgaacgaatctacatgacaaactatacgggaacaattttggattacgt
ccgagacatcaaaaatgagagtattgcaagtattcaattcagacagcaatggataatgaa
aactgaactgacgcctccaaaatatgaaggtgatggtcagttagacaaatggatgccaac
tcgtcgatggcataattcgagtggaattggttcaccgggacatactgcaaaatgtattgt
agacacatcgaaagtgtttatcatgtttgttcattacgtgacacagtttttccctgcgac
aaatgtttcggaatatgtacaaatgcgtgttgatccagaggagggtcttgtcagacatta
ccgtgatctttctctcggagattggggacgaatatggctgaatacaactctgcaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTTAGTATTGCGGATTGCTTA 424 163 831 Antisense
TTTTGGATTACGTCCGAGACATCAA 248 467 938 Antisense
AAAACTGAACTGACGCCTCCAAAAT 330 131 1009 Antisense
GCCAACTCGTCGATGGCATAATTCG 141 279 1065 Antisense
TATCATGTTTGTTCATTACGTGACA 396 659 1149 Antisense
TTACGTGACACAGTTTTTCCCTGCG 374 681 1164 Antisense
ACAGTTTTTCCCTGCGACAAATGTT 256 105 1173 Antisense
AAATGCGTGTTGATCCAGAGGAGGG 627 119 1211 Antisense
GAGGGTCTTGTCAGACATTACCGTG 73 403 1231 Antisense
ATTACCGTGATCTTTCTCTCGGAGA 513 13 1247 Antisense
ATGGCTGAATACAACTCTGCAATTT 66 53 1284 Antisense
Sequence Source Affymetrix Proprietary Database