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[183080_at]

Description F58G11.6 /REP_DB=WormBase Gene ID /WP=CE11410 /TR=Q9XVL8 /GB=CAB03152.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 62      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 353.9
(3)
A 		254.1
(-0.2)
A 		270
(0.3)
A 		168
(-3)
A 		186
B 436
(3)
A 		206.8
(-2.8)
A 		241.9
(-1.9)
A 		198.1
(-3)
P 		238
C 351.4
(3)
A 		282
(0.5)
A 		333.3
(2.4)
M 		183.4
(-3)
A 		168
avr 380.4
(3) 		247.6
(-1) 		281.7
(-0) 		183.2
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 435.8
(3)
A 		332.6
(-1.2)
A 		329.5
(-1.3)
P 		288.3
(-3)
P 		388.2
(1.1)
P 		413.8
(2.1)
P 		148
B 308
(-1.4)
A 		284.8
(-3)
A 		329.7
(0)
A 		374.3
(3)
A 		347.9
(1.2)
P 		341.7
(0.8)
P 		90
C 297.9
(-1.6)
A 		337.7
(0.2)
A 		265.6
(-3)
A 		399.9
(3)
A 		336.7
(0.2)
P 		295
(-1.7)
P 		134
avr 347.2
(1.7) 		318.4
(-1.8) 		308.3
(-3) 		354.2
(2.6) 		357.6
(3) 		350.2
(2.1) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 128.8
(3)
A 		55.2
(-1.2)
A 		70.6
(-0.4)
A 		24.6
(-3)
A 		104
B 139
(3)
A 		51.1
(-2.4)
A 		56
(-2.1)
A 		42.2
(-3)
P 		97
C 116.3
(3)
A 		81.1
(0.5)
A 		116.2
(3)
M 		30.9
(-3)
A 		85
avr 128
(3) 		62.5
(-1.1) 		80.9
(0) 		32.6
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 80.3
(-1.9)
A 		118.3
(3)
A 		71.7
(-3)
P 		73.1
(-2.8)
P 		117.1
(2.8)
P 		100.8
(0.7)
P 		47
B 107.2
(-0.3)
A 		94.8
(-1.6)
A 		80.1
(-3)
A 		99.1
(-1.1)
A 		141.3
(3)
P 		127.4
(1.6)
P 		61
C 110.4
(3)
A 		103.1
(2)
A 		67.6
(-3)
A 		80.4
(-1.2)
A 		109
(2.8)
P 		98.8
(1.4)
P 		43
avr 99.3
(0.2) 		105.4
(0.9) 		73.1
(-3) 		84.2
(-1.7) 		122.5
(3) 		109
(1.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13790
Sequence Type Exemplar sequence
Representative Public ID F58G11.6 NCBI
Target Description F58G11.6 /REP_DB=WormBase Gene ID /WP=CE11410 /TR=Q9XVL8 /GB=CAB03152.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073986 NCBI Caenorhabditis elegans F58G11.6 (F58G11.6) mRNA, complete cds. 11/11 None
SNAP00000001244 ENSEMBL cdna:SNAP chromosome:CEL140:V:13681467:13683994:1 11/11 None
GENEFINDER00000001252 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13681467:13683994:1 11/11 None
F58G11.6 ENSEMBL cdna:known chromosome:CEL140:V:13681467:13684134:1 gene:F58G11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13681466-13683994(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G11.6
Entrez Gene 186547 Entrez gene
SwissProt Q9XVL8 EMBL-EBI
WormBase CE11410 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261884_AT expressed protein at
CANINE:1589613_S_AT similar to CG14980-PB cfa
CANINE_2:CFA.1043.1.A1_AT similar to CG14980-PB cfa
CANINE_2:CFA.18807.1.S1_S_AT similar to CG14980-PB cfa
CANINE_2:CFAAFFX.23753.1.S1_AT similar to CG14980-PB cfa
CHICKEN:GGAAFFX.11805.1.S1_S_AT similar to chromosome 7 open reading frame 28B; CGI-43 like protein; H_DJ1163J12.2 gga
HG-U133_PLUS_2:208310_S_AT chromosome 7 open reading frame 28B hs
HG-U133A:208310_S_AT chromosome 7 open reading frame 28B hs
HG-FOCUS:208310_S_AT chromosome 7 open reading frame 28B hs
HG-U133A_2:208310_S_AT chromosome 7 open reading frame 28B hs
HG-U95AV2:40132_G_AT chromosome 7 open reading frame 28B hs
HG-U133A:201974_S_AT chromosome 7 open reading frame 28B hs
HG-U133_PLUS_2:201974_S_AT chromosome 7 open reading frame 28B hs
HG-U133A_2:201974_S_AT chromosome 7 open reading frame 28B hs
HG-U133_PLUS_2:215024_AT chromosome 7 open reading frame 28B hs
HG-U133A_2:215024_AT chromosome 7 open reading frame 28B hs
HG-U133A:215024_AT chromosome 7 open reading frame 28B hs
HU35KSUBA:AA235209_AT chromosome 7 open reading frame 28B hs
U133_X3P:G5901955_3P_S_AT chromosome 7 open reading frame 28B hs
U133_X3P:G11056021_3P_A_AT chromosome 7 open reading frame 28B hs
U133_X3P:HS.289112.0.A1_3P_A_AT chromosome 7 open reading frame 28B hs
U133_X3P:HS.274128.0.A1_3P_AT chromosome 7 open reading frame 28B hs
HG-U95E:73249_AT chromosome 7 open reading frame 28B hs
MU11KSUBA:AA666850_S_AT expressed sequence AU022870 mm
MG-U74AV2:160811_AT expressed sequence AU022870 mm
MOE430A:1433554_AT expressed sequence AU022870 mm
MOUSE430A_2:1433554_AT expressed sequence AU022870 mm
MOUSE430_2:1433554_AT expressed sequence AU022870 mm
MU19KSUBA:TC16280_AT Expressed sequence AU022870 (AU022870), mRNA mm
MU19KSUBA:TC16281_AT Expressed sequence AU022870 (AU022870), mRNA mm
MU19KSUBB:TC32417_AT Expressed sequence AU022870 (AU022870), mRNA mm
RG-U34C:RC_AI175547_AT similar to CG14980-PB (predicted) rn
RG-U34C:RC_AI169174_AT similar to CG14980-PB (predicted) rn
RAE230A:1367551_A_AT similar to CG14980-PB (predicted) rn
RAE230B:1367551_A_AT similar to CG14980-PB (predicted) rn
RAT230_2:1367551_A_AT similar to CG14980-PB (predicted) rn
RAE230B:1392029_AT similar to CG14980-PB (predicted) rn
RAT230_2:1392029_AT similar to CG14980-PB (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03152 Hypothetical protein F58G11.6 [Caenorhabditis elegans] ref|NP_506387.1| F58G11.6 [Caenorhabditis elegans] 0.0
blast CAE66263 Hypothetical protein CBG11507 [Caenorhabditis briggsae] 0.0
blast AAH55965 MGC68831 protein [Xenopus laevis] 9.0E-37
Sequence
Target Sequence 
>C. ELEGANS:183080_AT
ctgaatcatctcaatcatctcgcgccactccttcacagaatggtgttgtcagtcgtcgac
ttcttcgaaatattgatcagtttttggaaaccgaactttcacaagtagcgagtaaaattg
gtgacgaaatcggcgacgaaaagttcccggaagctccagatttccattacatttacttca
atccatcatcgttatccatgacctcaagcctttcaacatctccgaagcttcccgttgccg
cttctggatctaattcaacattaaaagtaccactgccaccagttgatgttaatcgtttag
tatgtgatacaatgagcaattttgtgtcggaaactgaagaatttggtgaatgtttcgtca
aatcttcaagtgattggtggattgttatcaaaaaggttaattctcgcctccttgtcttaa
tcattcctccatccaactacacatcatcccttgccgatgtccaatcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAATCATCTCAATCATCTCGCGC 120 239 1082 Antisense
CGCCACTCCTTCACAGAATGGTGTT 371 257 1104 Antisense
AATGGTGTTGTCAGTCGTCGACTTC 447 163 1120 Antisense
GAAAAGTTCCCGGAAGCTCCAGATT 69 355 1219 Antisense
GCTCCAGATTTCCATTACATTTACT 418 297 1234 Antisense
TACATTTACTTCAATCCATCATCGT 415 643 1249 Antisense
CCATCATCGTTATCCATGACCTCAA 195 271 1264 Antisense
TGCCGCTTCTGGATCTAATTCAACA 130 585 1317 Antisense
AGTACCACTGCCACCAGTTGATGTT 695 61 1347 Antisense
TCAAAAAGGTTAATTCTCGCCTCCT 536 629 1469 Antisense
TCCCTTGCCGATGTCCAATCAAAAA 635 595 1528 Antisense
Sequence Source Affymetrix Proprietary Database