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[183079_at]

Description F46F5.5 /REP_DB=WormBase Gene ID /WP=CE19421 /TR=Q9TXY0 /GB=AAC78185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 32.8
(2.2)
A 		22
(-0.6)
A 		35.8
(3)
A 		12.5
(-3)
A 		23
B 5
(-3)
A 		36.3
(1.6)
A 		40.8
(2.2)
A 		46.2
(3)
A 		41
C 7.9
(-3)
A 		37.8
(3)
A 		30.6
(1.6)
A 		10.6
(-2.5)
A 		30
avr 15.2
(-3) 		32
(1.9) 		35.7
(3) 		23.1
(-0.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.1
(2.3)
A 		6.4
(-0.1)
A 		1.7
(-3)
A 		5.4
(-0.7)
A 		11.3
(3)
A 		6
(-0.3)
A 		10
B 5.8
(-3)
A 		12.3
(-0.3)
A 		20.5
(3)
A 		6.8
(-2.6)
A 		17.3
(1.7)
A 		14.7
(0.6)
A 		15
C 32.3
(2.9)
A 		32.9
(3)
A 		8.5
(-1.8)
A 		10.4
(-1.4)
A 		2.1
(-3)
A 		2.5
(-2.9)
A 		31
avr 16.1
(2.3) 		17.2
(3) 		10.2
(-1.3) 		7.5
(-3) 		10.2
(-1.3) 		7.7
(-2.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.9
(3)
A 		4.8
(-1.2)
A 		9.4
(1.5)
A 		1.8
(-3)
A 		10
B 1.6
(-3)
A 		9
(2.4)
A 		9.5
(2.8)
A 		9.8
(3)
A 		8
C 2.6
(-2.5)
A 		10.9
(3)
A 		10.7
(2.9)
A 		1.8
(-3)
A 		9
avr 5.4
(-2) 		8.2
(1.1) 		9.9
(3) 		4.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.9
(0)
A 		2.3
(0.8)
A 		0.4
(-3)
A 		1.4
(-1)
A 		3.4
(3)
A 		1.5
(-0.8)
A 		3
B 2
(-2.8)
A 		4.1
(-0.3)
A 		5
(0.7)
A 		1.8
(-3)
A 		7
(3)
A 		5.5
(1.3)
A 		5
C 12
(3)
A 		10.1
(2)
A 		2.2
(-2.2)
A 		2.1
(-2.3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		11
avr 5.3
(2.7) 		5.5
(3) 		2.5
(-1.9) 		1.8
(-3) 		3.7
(0.1) 		2.6
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4832
Sequence Type Exemplar sequence
Representative Public ID F46F5.5 NCBI
Target Description F46F5.5 /REP_DB=WormBase Gene ID /WP=CE19421 /TR=Q9TXY0 /GB=AAC78185.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061417 NCBI Caenorhabditis elegans F46F5.5 (F46F5.5) mRNA, complete cds. 11/11 None
SNAP00000029522 ENSEMBL cdna:SNAP chromosome:CEL140:II:812147:814128:-1 11/11 None
GENEFINDER00000029537 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:812147:814351:-1 11/11 None
F46F5.5 ENSEMBL cdna:known chromosome:CEL140:II:812147:813714:-1 gene:F46F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029165 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029177 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:812146-813714(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.5
Entrez Gene 185858 Entrez gene
SwissProt Q9TXY0 EMBL-EBI
WormBase CE19421 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78185 Hypothetical protein F46F5.5 [Caenorhabditis elegans] ref|NP_493818.1| F46F5.5 [Caenorhabditis elegans] 1.0E-180
blast AAC78185 Hypothetical protein F46F5.5 [Caenorhabditis elegans] ref|NP_493818.1| F46F5.5 [Caenorhabditis elegans] 1.0E-164
Sequence
Target Sequence 
>C. ELEGANS:183079_AT
gaagcttcgcttctaacgatcgagtgcgatatttcgccggctacaatggacgagttggtg
caaattgcaaatcaatcacaagagatggcaatgtctataactcatgggtatgctgcagca
cagcactacattcgccgtcttggtgatccaatcgttccacgatttacatcgattcgatat
gtgacctcatctcgtctgcgaggacctagcggtgttttggccactgcactctctgtgatt
ttcgctgtgaaaggatggtctatgccgcacgacattcttgtgacagggtcacttggaaca
ggaggcaaagtggaaatggtcggatctatcaaagaaaaggtgaaattggcacggaacatg
aacatgacggcaatagttccacttggcaaccttgatgaagttccaaagatgttgaaggat
gaagtcataacggtctccagtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTCGCTTCTAACGATCGAGT 488 341 481 Antisense
GAGTGCGATATTTCGCCGGCTACAA 410 399 502 Antisense
TAACTCATGGGTATGCTGCAGCACA 704 637 578 Antisense
GCCGTCTTGGTGATCCAATCGTTCC 216 283 614 Antisense
TCGATATGTGACCTCATCTCGTCTG 427 603 654 Antisense
ATCTCGTCTGCGAGGACCTAGCGGT 286 7 669 Antisense
CACTGCACTCTCTGTGATTTTCGCT 229 199 702 Antisense
TGAAAGGATGGTCTATGCCGCACGA 210 573 728 Antisense
TGCCGCACGACATTCTTGTGACAGG 348 585 743 Antisense
GACGGCAATAGTTCCACTTGGCAAC 73 377 846 Antisense
GAAGTCATAACGGTCTCCAGTTTGA 193 337 901 Antisense
Sequence Source Affymetrix Proprietary Database