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[183078_at]

Description W08F4.5 /REP_DB=WormBase Gene ID /WP=CE14720 /TR=O02105 /GB=AAC71170.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 13      6grp_total > 19      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 136.4
(-2.9)
P 		134.4
(-3)
M 		146.1
(-2.6)
P 		298.6
(3)
P 		164
B 107.7
(-2.2)
A 		111.2
(-2)
A 		91.3
(-3)
P 		209
(3)
P 		118
C 119.6
(-2.3)
P 		145.5
(-1.6)
P 		91.6
(-3)
P 		323.1
(3)
P 		232
avr 121.2
(-2.6) 		130.4
(-2.3) 		109.7
(-3) 		276.9
(3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 227.1
(3)
P 		100
(-3)
P 		135.1
(-1.3)
P 		179.9
(0.8)
P 		179.5
(0.8)
P 		141.1
(-1.1)
P 		127
B 139.1
(0.8)
P 		133
(-0.4)
P 		143.4
(1.6)
P 		119.5
(-3)
P 		150.8
(3)
P 		145.5
(2)
P 		31
C 129.6
(-3)
P 		135.6
(-1.8)
P 		131.1
(-2.7)
P 		129.8
(-3)
A 		158.6
(3)
P 		131
(-2.7)
P 		29
avr 165.3
(3) 		122.9
(-3) 		136.5
(-1.1) 		143.1
(-0.1) 		163
(2.7) 		139.2
(-0.7) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 49.6
(3)
P 		29.2
(-3)
M 		38.2
(-0.4)
P 		43.7
(1.3)
P 		20
B 34.3
(0.4)
A 		27.5
(-1.4)
A 		21.2
(-3)
P 		44.5
(3)
P 		23
C 39.6
(-1)
P 		41.8
(-0.4)
P 		31.9
(-3)
P 		54.5
(3)
P 		23
avr 41.2
(0.8) 		32.8
(-2.2) 		30.4
(-3) 		47.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 41.9
(0)
P 		35.6
(-1.5)
P 		29.4
(-3)
P 		45.6
(0.9)
P 		54.2
(3)
P 		34.3
(-1.8)
P 		25
B 48.4
(0.4)
P 		44.3
(-0.4)
P 		34.8
(-2.4)
P 		31.7
(-3)
P 		61.3
(3)
P 		54.3
(1.6)
P 		30
C 48
(2.2)
P 		41.4
(0.6)
P 		33.4
(-1.3)
P 		26.1
(-3)
A 		51.3
(3)
P 		43.9
(1.2)
P 		25
avr 46.1
(0.5) 		40.4
(-0.9) 		32.5
(-3) 		34.5
(-2.5) 		55.6
(3) 		44.2
(0) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4921
Sequence Type Exemplar sequence
Representative Public ID W08F4.5 NCBI
Target Description W08F4.5 /REP_DB=WormBase Gene ID /WP=CE14720 /TR=O02105 /GB=AAC71170.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061357 NCBI Caenorhabditis elegans W08F4.5 (W08F4.5) mRNA, complete cds. 11/11 None
W08F4.5 ENSEMBL cdna:known chromosome:CEL140:II:565764:568795:-1 gene:W08F4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029460 1/11 Cross Hyb Matching Probes None
SNAP00000029461 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029480 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:565763-568795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08F4.5
Entrez Gene 189299 Entrez gene
SwissProt O02105 EMBL-EBI
WormBase CE14720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71170 Hypothetical protein W08F4.5 [Caenorhabditis elegans] ref|NP_493758.1| W08F4.5 [Caenorhabditis elegans] 1.0E-106
blast CAE62885 Hypothetical protein CBG07072 [Caenorhabditis briggsae] 5.0E-43
blast CAA91758 Hypothetical protein F54F7.5 [Caenorhabditis elegans] ref|NP_741906.1| Maternal Effect Sterile family member (mes-1) [Caenorhabditis elegans] gb|AAF13716.1| MES-1 [Caenorhabditis elegans] 4.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183078_AT
ttcttttgttcttattgctggtttttgttcatttcgcaaattcccgaactctcaccgacc
tcatctgcaagcttaatccatctcgatgtgactccttccggtccaatcacagagccaaaa
tctcagagcacacgggctccgccgctcctctgggagctccatcactagaggaattccaga
ggtggaataattacgaggagactgcacagggcactggattcttaaagcctgaaactggaa
acaatccggttccatatggtccaggtctcggtgatattggaatcttcacaggcgtcggcg
ttcagcacccgttcggtggaattggcttcgagcgggattttgggatatccatgggtggta
atggtcgaatcggtccagaaacaatttctgcaaggagaagatccctggaattccttagaa
cacttgctccgcacggaaattgtcgtcgttttgaaggagtcgacattggaaaatgggacg
gcttgccacgtcaagcggatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTGTTCTTATTGCTGGTTTT 35 691 26 Antisense
TTTCGCAAATTCCCGAACTCTCACC 592 669 57 Antisense
GACCTCATCTGCAAGCTTAATCCAT 536 383 82 Antisense
AATCCATCTCGATGTGACTCCTTCC 613 165 100 Antisense
TTCCGGTCCAATCACAGAGCCAAAA 199 697 121 Antisense
GAGACTGCACAGGGCACTGGATTCT 691 393 223 Antisense
AACAATCCGGTTCCATATGGTCCAG 345 133 265 Antisense
TATGGTCCAGGTCTCGGTGATATTG 70 567 280 Antisense
TATTGGAATCTTCACAGGCGTCGGC 479 665 300 Antisense
CGTTCAGCACCCGTTCGGTGGAATT 134 247 324 Antisense
ACGGCTTGCCACGTCAAGCGGATGG 561 95 503 Antisense
Sequence Source Affymetrix Proprietary Database