[Home] | [Total List]

[183077_s_at]

Description F58F6.5 /REP_DB=WormBase Gene ID /WP=CE17140 /TR=O44176 /GB=AAB88361.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.1
(-0.2)
A 		10.9
(-1.1)
A 		3.3
(-3)
A 		26.7
(3)
A 		23
B 4.8
(-3)
A 		11.9
(3)
A 		5.5
(-2.4)
A 		6.8
(-1.3)
A 		7
C 7.7
(-3)
A 		7.7
(-3)
A 		8.3
(3)
A 		8.1
(1)
A 		1
avr 8.9
(-0.7) 		10.2
(0.3) 		5.7
(-3) 		13.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.7
(-3)
A 		4
(-1.6)
A 		11.7
(3)
A 		3.7
(-1.8)
A 		1.9
(-2.9)
A 		1.8
(-2.9)
A 		10
B 0.4
(-3)
A 		12.9
(3)
A 		1.4
(-2.5)
A 		4.7
(-0.9)
A 		1.5
(-2.5)
A 		6.7
(0)
A 		13
C 4.6
(1)
A 		6.5
(3)
A 		3.2
(-0.5)
A 		2.9
(-0.9)
A 		0.9
(-3)
A 		3.8
(0.1)
A 		6
avr 2.2
(-2.3) 		7.8
(3) 		5.4
(0.8) 		3.8
(-0.8) 		1.4
(-3) 		4.1
(-0.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 5.1
(3)
A 		2.4
(-0.9)
A 		0.9
(-3)
A 		3.9
(1.3)
A 		4
B 1.5
(-2.3)
A 		2.9
(3)
A 		1.3
(-3)
A 		1.4
(-2.6)
A 		2
C 2.6
(1.8)
A 		2.2
(0.2)
A 		2.9
(3)
A 		1.4
(-3)
A 		2
avr 3.1
(3) 		2.5
(0.4) 		1.7
(-3) 		2.2
(-0.9) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.4
(-0)
A 		2.5
(3)
A 		0.9
(-1.4)
A 		0.6
(-2.2)
A 		0.4
(-2.7)
A 		2
B 0.2
(-3)
A 		4.3
(3)
A 		0.3
(-2.9)
A 		1.2
(-1.5)
A 		0.6
(-2.4)
A 		2.5
(0.4)
A 		4
C 1.7
(1.9)
A 		2
(3)
A 		0.8
(-1.2)
A 		0.6
(-1.9)
A 		0.3
(-3)
A 		1.3
(0.5)
A 		2
avr 0.7
(-2.4) 		2.6
(3) 		1.2
(-1) 		0.9
(-1.9) 		0.5
(-3) 		1.4
(-0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183077_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11044
Sequence Type Exemplar sequence
Representative Public ID F58F6.5 NCBI
Target Description F58F6.5 /REP_DB=WormBase Gene ID /WP=CE17140 /TR=O44176 /GB=AAB88361.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072844 NCBI Caenorhabditis elegans ZC196.8 (ZC196.8) mRNA, complete cds. 11/11 None
GENEFINDER00000023105 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8723786:8725290:-1 11/11 None
ZC196.8 ENSEMBL cdna:known chromosome:CEL140:V:8723786:8724848:-1 gene:ZC196.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067667 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017991 6/11 Cross Hyb Matching Probes None
F58F6.5 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1343684-1344833(+) 94.06 100.0
chrV:8724184-8725291(-) 93.66 93.66
Public Domain and Genome References
Gene Title
Ensembl ZC196.8
Entrez Gene 191106 Entrez gene
SwissProt O01624 EMBL-EBI
WormBase CE36058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52298 Hypothetical protein ZC196.8 [Caenorhabditis elegans] ref|NP_505245.2| ZC196.8 [Caenorhabditis elegans] 1.0E-135
blast AAB52298 Hypothetical protein ZC196.8 [Caenorhabditis elegans] ref|NP_505245.2| ZC196.8 [Caenorhabditis elegans] 1.0E-134
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-121
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-117
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-110
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 4.9E-95
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 4.9E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505245.2 6 12-34,44-66,87-106,148-170,187-209,219-238
ZC196.8 6 12-34,44-66,87-106,148-170,187-209,219-238
GENEFINDER00000023105 7 33-55,62-84,104-126,147-166,208-230,247-269,279-298
Sequence
Target Sequence 
>C. ELEGANS:183077_S_AT
gagattcttttggtttttgacacaattaacaacatcagcttttataatttctgcttcgaa
tctattcataaacattccagctgccctatctttattttcaaaagaagtaacgcaatcaca
gctatttttttttcttatcttattgatttttgtcattattctatacttttttcgaatttg
gtgatttccattcaacgtgcttttgtattttttctacgtaactggacaaaccaatttttt
gaatctaaggcaatatatatttggcttgcaagtatttacatatttgcttttggtgtggaa
tatgcattaatgtcttcaaattgtcaatatggatatgataaaacttctaaaaattatcaa
ttagtctgtgaagcagacaatcgcggaatcatgaaaacagtagcaacgccagctggaatt
cagtttgtgattattacaaaatcgatacttaaattaaatttgaaaatgatttcaggtgga
aactttgctacatatcgttattcctttgtttatacttatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTCTTTTGGTTTTTGACACAA 129 395 145 Antisense
TAATTTCTGCTTCGAATCTATTCAT 437 635 189 Antisense
TATTCATAAACATTCCAGCTGCCCT 697 661 207 Antisense
AGCTGCCCTATCTTTATTTTCAAAA 524 79 223 Antisense
GAAGTAACGCAATCACAGCTATTTT 209 337 248 Antisense
TGTCATTATTCTATACTTTTTTCGA 359 559 295 Antisense
GGTGATTTCCATTCAACGTGCTTTT 31 501 324 Antisense
GAAGCAGACAATCGCGGAATCATGA 258 341 514 Antisense
GTAGCAACGCCAGCTGGAATTCAGT 27 457 544 Antisense
ACTTTGCTACATATCGTTATTCCTT 258 103 626 Antisense
GTTATTCCTTTGTTTATACTTATCA 64 449 641 Antisense
Sequence Source Affymetrix Proprietary Database