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[183076_at]

Description T15B7.1 /REP_DB=WormBase Gene ID /WP=CE13648 /TR=O17043 /GB=AAB69973.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_high_8_8 > 58      6grp_highest_nonorm > 52      6grp_total > 41      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 512.5
(3)
P 		398.6
(1.5)
P 		405.9
(1.6)
P 		59.4
(-3)
A 		453
B 473.5
(3)
P 		310.7
(0.6)
P 		371.9
(1.5)
P 		71.3
(-3)
P 		402
C 543.4
(3)
P 		315
(-0.1)
P 		472.2
(2)
P 		99
(-3)
P 		444
avr 509.8
(3) 		341.4
(0.7) 		416.7
(1.7) 		76.6
(-3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 425.2
(-1.1)
P 		439.2
(-1)
P 		935.4
(3)
P 		603.5
(0.4)
P 		404.8
(-1.2)
P 		182.3
(-3)
P 		753
B 531.9
(-0.1)
P 		584.2
(0.3)
P 		925.4
(3)
P 		624.3
(0.6)
P 		437.7
(-0.9)
P 		173.3
(-3)
P 		752
C 440.9
(-0.7)
P 		685.6
(2.1)
P 		740.6
(2.8)
P 		758.4
(3)
P 		363.9
(-1.6)
P 		247.9
(-3)
P 		511
avr 466
(-0.6) 		569.7
(0.3) 		867.1
(3) 		662.1
(1.2) 		402.1
(-1.2) 		201.2
(-3) 		666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 186.6
(3)
P 		86.5
(-0.4)
P 		106.1
(0.3)
P 		8.7
(-3)
A 		178
B 151
(3)
P 		76.7
(-0.3)
P 		86.2
(0.1)
P 		15.2
(-3)
P 		136
C 179.9
(3)
P 		90.6
(-0.3)
P 		164.6
(2.4)
P 		16.7
(-3)
P 		163
avr 172.5
(3) 		84.6
(-0.3) 		119
(1) 		13.5
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 78.4
(-1.7)
P 		156.2
(1.2)
P 		203.7
(3)
P 		153.1
(1.1)
P 		122.2
(-0.1)
P 		44.4
(-3)
P 		159
B 185.1
(1.5)
P 		194.5
(1.9)
P 		224.7
(3)
P 		165.3
(0.8)
P 		177.8
(1.2)
P 		64.6
(-3)
P 		160
C 163.4
(0.8)
P 		209.2
(3)
P 		188.5
(2)
P 		152.5
(0.3)
P 		117.7
(-1.4)
P 		83
(-3)
P 		126
avr 142.3
(0.3) 		186.6
(2.2) 		205.6
(3) 		157
(0.9) 		139.2
(0.2) 		64
(-3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11984
Sequence Type Exemplar sequence
Representative Public ID T15B7.1 NCBI
Target Description T15B7.1 /REP_DB=WormBase Gene ID /WP=CE13648 /TR=O17043 /GB=AAB69973.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072342 NCBI Caenorhabditis elegans T15B7.1 (T15B7.1) mRNA, complete cds. 11/11 None
SNAP00000035394 ENSEMBL cdna:SNAP chromosome:CEL140:V:6845405:6848979:1 11/11 None
GENEFINDER00000035401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6845405:6848979:1 11/11 None
T15B7.1 ENSEMBL cdna:known chromosome:CEL140:V:6845387:6849246:1 gene:T15B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6847687-6848697(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.1
Entrez Gene 188512 Entrez gene
SwissProt Q5ZR75 EMBL-EBI
WormBase CE37677 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22092.1.S1_S_AT similar to tenascin R (restrictin, janusin) cfa
CHICKEN:GGA.711.1.S1_AT tenascin R (restrictin, janusin) gga
HG-U133_PLUS_2:206990_AT tenascin R (restrictin, janusin) hs
HG-U133A_2:206990_AT tenascin R (restrictin, janusin) hs
HG-U133A:206990_AT tenascin R (restrictin, janusin) hs
HG-FOCUS:206990_AT tenascin R (restrictin, janusin) hs
HUGENEFL:X98085_AT tenascin R (restrictin, janusin) hs
U133_X3P:G4507630_3P_AT tenascin R (restrictin, janusin) hs
HG-U95AV2:34598_AT tenascin R (restrictin, janusin) hs
MG-U74CV2:135907_AT Tenascin R (Tnr), mRNA mm
RG-U34A:Z18630_AT tenascin R rn
RAE230A:1369692_AT tenascin R rn
RAT230_2:1369692_AT tenascin R rn
Protein Similarities
Method ID Description E-Value
blast AAV28323 Hypothetical protein T15B7.1 [Caenorhabditis elegans] ref|NP_504743.2| T15B7.1 [Caenorhabditis elegans] 0.0
blast AAV28323 Hypothetical protein T15B7.1 [Caenorhabditis elegans] ref|NP_504743.2| T15B7.1 [Caenorhabditis elegans] 1.0E-164
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 6.0E-87
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 8.0E-87
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 9.0E-87
blast CAE71963 Hypothetical protein CBG19033 [Caenorhabditis briggsae] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.9E-29
Pfam IPR001304 EMBL-EBI C-type lectin 8.7E-10
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.9E-29
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-10
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.6E-26
Sequence
Target Sequence 
>C. ELEGANS:183076_AT
tggaggaggatgggttctttttcaaaaccgttttgatgacagtgaaagctattgggacag
aaaatgggatgaatataagaacggattcggagatgttgatgaaaattcaaacttttggtt
aggaaacgaggcgcttcatgtgatgaccacaaacaaaaaagtgactttgagagttgaaat
gtatggagatagaactccaaactctaaaaatgccacagacttctggttcggacactattt
tgactttcaggttggatctaaaacccaaaactaccctcttctcgatcttactatggattg
ggctaacccaattggtaatgcttctacagcttggtacgacttgacttgttcaatcggatc
accattctctacaattgataatattcacgatcccgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGGAGGATGGGTTCTTTTTCAA 475 549 24 Antisense
ACGAGGCGCTTCATGTGATGACCAC 48 95 149 Antisense
GAACTCCAAACTCTAAAAATGCCAC 92 149 215 Antisense
AATGCCACAGACTTCTGGTTCGGAC 465 167 232 Antisense
GGTTCGGACACTATTTTGACTTTCA 519 505 248 Antisense
CCCTCTTCTCGATCTTACTATGGAT 382 259 297 Antisense
GGGCTAACCCAATTGGTAATGCTTC 641 471 323 Antisense
GGTAATGCTTCTACAGCTTGGTACG 551 503 337 Antisense
AGCTTGGTACGACTTGACTTGTTCA 567 77 351 Antisense
TTGACTTGTTCAATCGGATCACCAT 603 705 364 Antisense
ATTGATAATATTCACGATCCCGTCA 542 3 397 Antisense
Sequence Source Affymetrix Proprietary Database