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[183075_at]

Description B0432.6 /REP_DB=WormBase Gene ID /WP=CE07744 /TR=P90987 /GB=AAB37891.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.9
(-2.8)
A 		40.6
(3)
A 		2.5
(-3)
A 		13.2
(-1.3)
A 		38
B 26.3
(2.2)
A 		7.5
(-3)
A 		29
(3)
A 		11.1
(-2)
A 		22
C 24.9
(-1.7)
A 		18.1
(-2.3)
A 		10
(-3)
A 		79.4
(3)
A 		69
avr 18.4
(-1.7) 		22.1
(-0.6) 		13.8
(-3) 		34.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4
(-2.8)
A 		5.7
(-2.5)
A 		26
(2)
A 		30.3
(3)
A 		14.1
(-0.6)
A 		3.3
(-3)
A 		27
B 3.9
(-2.9)
A 		3.2
(-3)
A 		31.2
(3)
A 		16.7
(-0.1)
A 		17.7
(0.1)
A 		19
(0.4)
A 		28
C 2
(-3)
A 		40.6
(2.8)
A 		41.8
(3)
A 		4.5
(-2.6)
A 		2.6
(-2.9)
A 		9.4
(-1.9)
A 		40
avr 3.3
(-3) 		16.5
(-0.3) 		33
(3) 		17.2
(-0.2) 		11.5
(-1.3) 		10.6
(-1.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-2.4)
A 		8.8
(3)
A 		0.6
(-3)
A 		1.9
(-2)
A 		8
B 8.4
(3)
A 		1.9
(-3)
A 		6.7
(1.4)
A 		2.4
(-2.5)
A 		7
C 8.2
(-0.2)
A 		5.2
(-2)
A 		3.5
(-3)
A 		13.4
(3)
A 		10
avr 6
(3) 		5.3
(1.3) 		3.6
(-3) 		5.9
(2.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2
(-1.9)
A 		5.7
(1.3)
A 		7.7
(3)
A 		4.2
(0)
A 		0.8
(-2.9)
A 		7
B 1.4
(-2.7)
A 		1.1
(-3)
A 		7.6
(3)
A 		4.4
(0)
A 		7.2
(2.6)
A 		7.1
(2.5)
A 		7
C 0.7
(-3)
A 		12.4
(3)
A 		10.6
(2.1)
A 		0.9
(-2.9)
A 		0.8
(-2.9)
A 		3.2
(-1.7)
A 		12
avr 0.9
(-3) 		5.2
(0.6) 		8
(3) 		4.3
(-0.1) 		4.1
(-0.3) 		3.7
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5018
Sequence Type Exemplar sequence
Representative Public ID B0432.6 NCBI
Target Description B0432.6 /REP_DB=WormBase Gene ID /WP=CE07744 /TR=P90987 /GB=AAB37891.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061288(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061288 NCBI Caenorhabditis elegans B0432.6 (B0432.6) mRNA, complete cds. 10/11 None
SNAP00000033637 ENSEMBL cdna:SNAP chromosome:CEL140:II:266446:273892:-1 10/11 None
GENEFINDER00000033654 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:266127:273892:-1 10/11 None
B0432.6 ENSEMBL cdna:known chromosome:CEL140:II:266446:269183:-1 gene:B0432.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:266445-269183(-) 96.94 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.6
Entrez Gene 181988 Entrez gene
SwissProt P90987 EMBL-EBI
WormBase CE34636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37892 Hypothetical protein B0432.7 [Caenorhabditis elegans] ref|NP_493690.1| B0432.7 [Caenorhabditis elegans] 1.0E-154
blast AAB37891 Hypothetical protein B0432.6 [Caenorhabditis elegans] ref|NP_493689.2| B0432.6 [Caenorhabditis elegans] 1.0E-153
blast AAB37891 Hypothetical protein B0432.6 [Caenorhabditis elegans] ref|NP_493689.2| B0432.6 [Caenorhabditis elegans] 1.0E-152
blast AAB37892 Hypothetical protein B0432.7 [Caenorhabditis elegans] ref|NP_493690.1| B0432.7 [Caenorhabditis elegans] 1.0E-145
blast CAE62844 Hypothetical protein CBG07023 [Caenorhabditis briggsae] 1.0E-110
blast CAE62845 Hypothetical protein CBG07024 [Caenorhabditis briggsae] 1.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033654 2 944-966,979-1001
Sequence
Target Sequence 
>C. ELEGANS:183075_AT
tattccagaatccctacaaaacgcggaacgtaatgtccatactgcacaaaatgaaatttc
caaattgaacaccgaattggctcaaagtgtcactcggatagagctctttttggctgaaaa
tcgcgagctgaaacaagaatttgaggagaaagttgtcgagtgtgaagtgctcaaagagca
tatccgccaaatcgatttggagctcaagaacaagcaatcagacatggaaagagcactctt
acagatatcggccgccgaacaaaaggcagcaaaaaaggaactggagctgatagaagctga
aaaacatctaaaactctatgaatcgcgtctatcggaccgagaacgtgatttgaacgcgaa
aaatctggaaatcgaccgtctgaaactggatttggacgcggcacgccggaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCAGAATCCCTACAAAACGCG 609 663 681 Antisense
GGAACGTAATGTCCATACTGCACAA 25 531 705 Antisense
GTGTCACTCGGATAGAGCTCTTTTT 663 485 767 Antisense
GAGCTCTTTTTGGCTGAAAATCGCG 151 387 781 Antisense
AGAGCATATCCGCCAAATCGATTTG 33 69 855 Antisense
AGAGCACTCTTACAGATATCGGCCG 670 67 910 Antisense
ATCGGCCGCCGAACAAAAGGCAGCA 41 3 927 Antisense
AAAACTCTATGAATCGCGTCTATCG 201 131 990 Antisense
ATCGCGTCTATCGGACCGAGAACGT 627 37 1002 Antisense
ATCGACCGTCTGAAACTGGATTTGG 287 37 1051 Antisense
GATTTGGACGCGGCACGCCGGAATC 242 425 1069 Antisense
Sequence Source Affymetrix Proprietary Database