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[183074_at]

Description W06D11.3 /REP_DB=WormBase Gene ID /WP=CE06554 /TR=Q23198 /GB=CAA93536.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 14.2
(-2.1)
A 		13.9
(-2.2)
A 		2.8
(-3)
A 		81.4
(3)
A 		79
B 21
(0.4)
A 		29.6
(3)
A 		9.7
(-3)
A 		23.3
(1.1)
A 		20
C 5.2
(-3)
A 		31
(-1.4)
A 		8.9
(-2.8)
A 		101.1
(3)
A 		96
avr 13.5
(-2.4) 		24.8
(-1.3) 		7.1
(-3) 		68.6
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 10
(-2.8)
A 		1.9
(-3)
A 		5.9
(-2.9)
A 		19
(-2.5)
A 		113.7
(0.3)
A 		204.4
(3)
P 		203
B 19.4
(-2.4)
A 		19.1
(-2.4)
A 		27.9
(-2.2)
A 		2
(-3)
A 		105.2
(0.4)
A 		185.6
(3)
P 		184
C 3.3
(-3)
A 		7.6
(-2.9)
A 		14.2
(-2.7)
A 		9.3
(-2.8)
A 		91.4
(-0.5)
A 		211.8
(3)
P 		209
avr 10.9
(-3) 		9.5
(-3) 		16
(-2.8) 		10.1
(-3) 		103.4
(-0.1) 		200.6
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.2
(-0.6)
A 		3
(-1.8)
A 		0.7
(-3)
A 		11.9
(3)
A 		11
B 6.7
(2.3)
A 		7.3
(3)
A 		2.3
(-3)
A 		5
(0.2)
A 		5
C 1.7
(-3)
A 		8.9
(-0.2)
A 		3.1
(-2.5)
A 		17
(3)
A 		15
avr 4.5
(-1.4) 		6.4
(-0.2) 		2
(-3) 		11.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		0.7
(-3)
A 		1.3
(-2.9)
A 		4.8
(-2.5)
A 		34.3
(1.1)
A 		49.8
(3)
P 		49
B 6.7
(-2.5)
A 		6.3
(-2.5)
A 		6.8
(-2.4)
A 		0.5
(-3)
A 		42.7
(0.7)
A 		69.2
(3)
P 		69
C 1.2
(-3)
A 		2.3
(-2.9)
A 		3.6
(-2.8)
A 		1.9
(-2.9)
A 		29.6
(-0.6)
A 		70.9
(3)
P 		70
avr 3.2
(-2.9) 		3.1
(-2.9) 		3.9
(-2.9) 		2.4
(-3) 		35.5
(0.3) 		63.3
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16689
Sequence Type Exemplar sequence
Representative Public ID W06D11.3 NCBI
Target Description W06D11.3 /REP_DB=WormBase Gene ID /WP=CE06554 /TR=Q23198 /GB=CAA93536.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077653 NCBI Caenorhabditis elegans W06D11.3 (W06D11.3) mRNA, complete cds. 11/11 None
SNAP00000035023 ENSEMBL cdna:SNAP chromosome:CEL140:X:12298612:12299221:1 11/11 None
GENEFINDER00000035029 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12298612:12299221:1 11/11 None
W06D11.3 ENSEMBL cdna:known chromosome:CEL140:X:12298612:12299221:1 gene:W06D11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12298611-12299221(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D11.3
Entrez Gene 189243 Entrez gene
SwissProt Q23198 EMBL-EBI
WormBase CE06554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93536 Hypothetical protein W06D11.3 [Caenorhabditis elegans] ref|NP_510054.1| W06D11.3 [Caenorhabditis elegans] 5.0E-51
Sequence
Target Sequence 
>C. ELEGANS:183074_AT
tggactactcgaagacttccacggcgaaaaaccatccagaatcttcagactcggaaccaa
gaaagagaagaaattccagaaaaaggacacccttcgtcaggaagtgctcaactctcattt
ccttgacaatttgcatatctatgtcgttcgagaacgcaagctgaggagagaagaaagaca
gaaacgtcgtgaatctaaggactcttcaaagcaacatatggtcactgagaacattgaaac
tgtcgacgccgaaaacgagcaacaggatggagaaaaaatcgcatcgaacaccggcgatgc
tccaaatatcacacatctggtggacacttctagctcggatattgctggtactaccgacag
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTACTCGAAGACTTCCACGGC 492 547 21 Antisense
CTTCCACGGCGAAAAACCATCCAGA 695 211 36 Antisense
AACCATCCAGAATCTTCAGACTCGG 323 147 50 Antisense
GGACACCCTTCGTCAGGAAGTGCTC 546 523 105 Antisense
GGAAGTGCTCAACTCTCATTTCCTT 666 531 120 Antisense
GCATATCTATGTCGTTCGAGAACGC 21 309 153 Antisense
GAACATTGAAACTGTCGACGCCGAA 563 347 249 Antisense
CATCGAACACCGGCGATGCTCCAAA 574 209 302 Antisense
ATATCACACATCTGGTGGACACTTC 191 21 326 Antisense
TGGACACTTCTAGCTCGGATATTGC 462 547 341 Antisense
GGATATTGCTGGTACTACCGACAGT 448 509 357 Antisense
Sequence Source Affymetrix Proprietary Database