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[183073_at]

Description ZK355.5 /REP_DB=WormBase Gene ID /WP=CE24724 /TR=Q9N4N7 /GB=AAF39999.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 19      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 33.5
(-1.1)
A 		8.3
(-2.9)
A 		6.8
(-3)
A 		91.3
(3)
A 		85
B 33.4
(-3)
A 		38.5
(-2.3)
A 		33.6
(-3)
A 		75.7
(3)
A 		42
C 33.6
(-1.8)
A 		77.5
(0.6)
A 		12.6
(-3)
A 		119.9
(3)
P 		107
avr 33.5
(-1.8) 		41.4
(-1.2) 		17.7
(-3) 		95.6
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 87.6
(-0.1)
P 		74.6
(-1.2)
P 		113.4
(2)
P 		124.6
(3)
P 		53.9
(-3)
A 		67.7
(-1.8)
A 		71
B 82.6
(1.3)
P 		89.7
(1.9)
P 		101.9
(3)
P 		77.5
(0.8)
P 		41.3
(-2.4)
A 		35
(-3)
A 		67
C 103.6
(1.6)
P 		104.2
(1.7)
P 		84.6
(0.5)
P 		126.4
(3)
P 		27.7
(-3)
A 		35.6
(-2.5)
A 		99
avr 91.3
(1.4) 		89.5
(1.2) 		100
(2.2) 		109.5
(3) 		41
(-3) 		46.1
(-2.6) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.2
(2.4)
A 		1.8
(-3)
A 		1.8
(-3)
A 		13.4
(3)
A 		12
B 10.7
(-0.9)
A 		9.5
(-1.8)
A 		7.8
(-3)
A 		16.1
(3)
A 		8
C 11.1
(-0.8)
A 		22.3
(3)
A 		4.4
(-3)
A 		20.2
(2.3)
P 		18
avr 11.3
(0.3) 		11.2
(0.3) 		4.7
(-3) 		16.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16.2
(-3)
P 		26.5
(1)
P 		24.7
(0.3)
P 		31.6
(3)
P 		16.3
(-3)
A 		16.5
(-2.9)
A 		15
B 28.7
(2.6)
P 		29.9
(3)
P 		24.7
(1.1)
P 		20.5
(-0.4)
P 		16.8
(-1.7)
A 		13.1
(-3)
A 		17
C 38.4
(3)
P 		31.8
(1.7)
P 		21.5
(-0.4)
P 		25.4
(0.3)
P 		9
(-3)
A 		11.9
(-2.4)
A 		29
avr 27.8
(2.4) 		29.4
(3) 		23.6
(0.8) 		25.8
(1.6) 		14
(-2.9) 		13.8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5471
Sequence Type Exemplar sequence
Representative Public ID ZK355.5 NCBI
Target Description ZK355.5 /REP_DB=WormBase Gene ID /WP=CE24724 /TR=Q9N4N7 /GB=AAF39999.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062003 NCBI Caenorhabditis elegans ZK355.5 (ZK355.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021477 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2933517:2937948:-1 10/11 None
ZK355.5 ENSEMBL cdna:known chromosome:CEL140:II:2934801:2937948:-1 gene:ZK355.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2934799-2937947(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK355.5
Entrez Gene 191300 Entrez gene
SwissProt Q9N4N7 EMBL-EBI
WormBase CE24724 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 0.0
blast AAC68705 Hypothetical protein T11F1.8 [Caenorhabditis elegans] ref|NP_494409.1| T11F1.8 [Caenorhabditis elegans] 1.0E-114
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 1.0E-112
blast AAC68705 Hypothetical protein T11F1.8 [Caenorhabditis elegans] ref|NP_494409.1| T11F1.8 [Caenorhabditis elegans] 2.0E-97
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.6E-17
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.6E-17
Sequence
Target Sequence 
>C. ELEGANS:183073_AT
aacctgcaaaatttgcaccccgacttctgtctaaccattcaagaaatgatgaattttctt
gcatacgtaaaattcacgaatatacaagccaaatattgctcacagaatctagccaaaaaa
atcccatatctcactaaaccttgtgcattttccaagttgagctcttcagaggaaaactgt
acagcactagtgggaaatgtggtggtcgacgccaacgatggtagatatctctacaaactt
tttaaaatcaaatatatatttggcacgttgaaaattcagtactctaaatcggatgggttg
tactttttgacagatcttaactatattgggaacttggatgcttctattccggcggttctt
atcagatcaaataactatttaatcaagcctaaccttccagtgataatgaatattatctca
tctagtggccagcaagctgtaatttatgataatcaacttttacctactgattatgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTGCAAAATTTGCACCCCGACT 475 145 910 Antisense
CCGACTTCTGTCTAACCATTCAAGA 344 263 929 Antisense
AAAATCCCATATCTCACTAAACCTT 622 131 1027 Antisense
CTCACTAAACCTTGTGCATTTTCCA 563 227 1039 Antisense
GCATTTTCCAAGTTGAGCTCTTCAG 66 309 1054 Antisense
AATGTGGTGGTCGACGCCAACGATG 71 163 1105 Antisense
GAACTTGGATGCTTCTATTCCGGCG 604 349 1239 Antisense
TATTCCGGCGGTTCTTATCAGATCA 357 663 1254 Antisense
TTAATCAAGCCTAACCTTCCAGTGA 96 683 1288 Antisense
TATCTCATCTAGTGGCCAGCAAGCT 617 657 1323 Antisense
CAACTTTTACCTACTGATTATGAAC 157 189 1363 Antisense
Sequence Source Affymetrix Proprietary Database