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[183072_at]

Description F55D12.1 /REP_DB=WormBase Gene ID /WP=CE05955 /TR=Q20830 /GB=CAA99859.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 60      6grp_total > 23      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 473.5
(2.6)
P 		482.5
(3)
P 		372.8
(-2.3)
P 		358.4
(-3)
P 		124
B 552.9
(3)
P 		482.8
(1.3)
P 		385.3
(-1.2)
P 		312
(-3)
P 		241
C 564.9
(3)
P 		508.9
(1.5)
P 		360.1
(-2.3)
P 		334.5
(-3)
P 		230
avr 530.4
(3) 		491.4
(1.8) 		372.7
(-1.8) 		335
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 604.1
(3)
P 		448.2
(0.3)
P 		472.6
(0.7)
P 		397.5
(-0.6)
P 		316.3
(-2.1)
P 		262.7
(-3)
P 		341
B 511.5
(3)
P 		489.7
(2.5)
P 		446.5
(1.4)
P 		330.7
(-1.4)
P 		262.7
(-3)
P 		265
(-2.9)
P 		249
C 471
(3)
P 		421.2
(1.9)
P 		458.1
(2.7)
P 		378.8
(0.9)
P 		282.7
(-1.3)
P 		209.3
(-3)
P 		262
avr 528.9
(3) 		453
(1.4) 		459.1
(1.5) 		369
(-0.4) 		287.2
(-2.1) 		245.7
(-3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 172.4
(3)
P 		104.7
(-0.4)
P 		97.5
(-0.7)
P 		52.5
(-3)
P 		120
B 176.3
(3)
P 		119.2
(-0.1)
P 		89.3
(-1.8)
P 		66.5
(-3)
P 		110
C 187
(3)
P 		146.3
(1.1)
P 		125.5
(0.2)
P 		56.4
(-3)
P 		131
avr 178.6
(3) 		123.4
(0.2) 		104.1
(-0.7) 		58.5
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 111.4
(-0)
P 		159.4
(3)
P 		102.9
(-0.6)
P 		100.8
(-0.7)
P 		95.5
(-1)
P 		64
(-3)
P 		95
B 178
(3)
P 		163
(2)
P 		108.4
(-1.6)
P 		87.6
(-3)
P 		106.7
(-1.7)
P 		98.8
(-2.3)
P 		90
C 174.6
(3)
P 		128.5
(0.4)
P 		116.6
(-0.3)
P 		76.2
(-2.6)
P 		91.5
(-1.8)
P 		70.1
(-3)
P 		105
avr 154.7
(3) 		150.3
(2.7) 		109.3
(-0.5) 		88.2
(-2.2) 		97.9
(-1.4) 		77.6
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.517
Sequence Type Exemplar sequence
Representative Public ID F55D12.1 NCBI
Target Description F55D12.1 /REP_DB=WormBase Gene ID /WP=CE05955 /TR=Q20830 /GB=CAA99859.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059777 NCBI Caenorhabditis elegans F55D12.1 (F55D12.1) mRNA, complete cds. 11/11 None
SNAP00000016626 ENSEMBL cdna:SNAP chromosome:CEL140:I:7892478:7893701:1 11/11 None
GENEFINDER00000016634 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7892478:7896938:1 11/11 None
F55D12.1 ENSEMBL cdna:known chromosome:CEL140:I:7892478:7893701:1 gene:F55D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7892408-7893632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55D12.1
Entrez Gene 186308 Entrez gene
SwissProt Q20830 EMBL-EBI
WormBase CE05955 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99859 Hypothetical protein F55D12.1 [Caenorhabditis elegans] ref|NP_492178.1| F55D12.1 [Caenorhabditis elegans] 2.0E-65
blast CAA99859 Hypothetical protein F55D12.1 [Caenorhabditis elegans] ref|NP_492178.1| F55D12.1 [Caenorhabditis elegans] 1.0E-63
blast CAE63735 Hypothetical protein CBG08264 [Caenorhabditis briggsae] 9.0E-42
blast CAE63735 Hypothetical protein CBG08264 [Caenorhabditis briggsae] 7.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492178.1 1 113-135
F55D12.1 1 113-135
SNAP00000016626 1 113-135
GENEFINDER00000016634 1 113-135
Sequence
Target Sequence 
>C. ELEGANS:183072_AT
atgaacgaaaatctccacatccaccacagaatgtaatatcagaaagaagagaatttgttt
catgtgaatatagaagagaacctttgcatcaagaacaaagtcgccccagctcaattcttc
gcaatccgttgcctcaatcacatccatacgaagaaagagaaaatgctcgattggcatgtg
aatacagaagagatcaacaatccgaacatggccaacttgcatgcgaactgagagcccgac
catctacaaccatcaccacgttccttcctgagaataccaaaaggaaaatgccacttccaa
ttggatggattgtttgcattgctgtctgcattccaattctaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGAAAATCTCCACATCCACC 379 43 44 Antisense
TCTCCACATCCACCACAGAATGTAA 440 609 55 Antisense
GCATCAAGAACAAAGTCGCCCCAGC 360 309 129 Antisense
TTGCCTCAATCACATCCATACGAAG 174 703 172 Antisense
TGCTCGATTGGCATGTGAATACAGA 494 581 207 Antisense
ACAATCCGAACATGGCCAACTTGCA 184 115 240 Antisense
CTTGCATGCGAACTGAGAGCCCGAC 13 219 259 Antisense
CACGTTCCTTCCTGAGAATACCAAA 410 197 300 Antisense
AATGCCACTTCCAATTGGATGGATT 283 167 330 Antisense
GGATGGATTGTTTGCATTGCTGTCT 204 515 346 Antisense
TGCTGTCTGCATTCCAATTCTAATT 40 583 363 Antisense
Sequence Source Affymetrix Proprietary Database