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[183071_at]

Description C34B2.9 /REP_DB=WormBase Gene ID /WP=CE27816 /TR=O44958 /GB=AAB97541.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 82      4grp_total > 43      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 171.1
(-2)
P 		179.9
(-0.7)
A 		204.4
(3)
P 		164.8
(-3)
A 		40
B 185.5
(-0.3)
P 		251.1
(3)
P 		144
(-2.4)
A 		132.9
(-3)
A 		118
C 213.7
(0.2)
P 		232.8
(3)
A 		191.5
(-3)
A 		202.1
(-1.5)
A 		41
avr 190.1
(-0.4) 		221.3
(3) 		180
(-1.5) 		166.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 236.3
(1.9)
P 		226.6
(0.8)
P 		194.3
(-3)
P 		211.3
(-1)
P 		245.6
(3)
P 		194.7
(-3)
P 		51
B 177.7
(-0.1)
P 		233.2
(3)
P 		205.8
(1.5)
P 		206.8
(1.5)
P 		200.3
(1.2)
P 		124.6
(-3)
P 		109
C 177.9
(-2.4)
A 		222.9
(0.2)
P 		193.8
(-1.5)
P 		271.5
(3)
P 		217.3
(-0.1)
P 		167.7
(-3)
P 		104
avr 197.3
(0.1) 		227.6
(2.8) 		198
(0.2) 		229.9
(3) 		221.1
(2.2) 		162.3
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 62.3
(3)
P 		39
(-0.7)
A 		53.4
(1.6)
P 		24.1
(-3)
A 		38
B 59.2
(2.5)
P 		62
(3)
P 		33.4
(-2.1)
A 		28.3
(-3)
A 		34
C 70.7
(3)
P 		66.9
(2.4)
A 		66.8
(2.4)
A 		34.1
(-3)
A 		37
avr 64.1
(3) 		56
(1.6) 		51.2
(0.8) 		28.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 43.6
(-2.8)
P 		80.6
(3)
P 		42.3
(-3)
P 		53.6
(-1.2)
P 		74.1
(2)
P 		47.4
(-2.2)
P 		38
B 61.8
(-0.4)
P 		77.6
(2.3)
P 		50
(-2.4)
P 		54.8
(-1.6)
P 		81.4
(3)
P 		46.5
(-3)
P 		35
C 65.9
(1.7)
A 		68
(2.3)
P 		49.3
(-3)
P 		54.6
(-1.5)
P 		70.3
(3)
P 		56.1
(-1.1)
P 		21
avr 57.1
(-0.9) 		75.4
(3) 		47.2
(-3) 		54.3
(-1.5) 		75.3
(3) 		50
(-2.4) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.773
Sequence Type Exemplar sequence
Representative Public ID C34B2.9 NCBI
Target Description C34B2.9 /REP_DB=WormBase Gene ID /WP=CE27816 /TR=O44958 /GB=AAB97541.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060402
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007252 ENSEMBL cdna:SNAP chromosome:CEL140:I:10707801:10711921:-1 11/11 None
GENEFINDER00000007256 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10707801:10711921:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060402 8/11 Cross Hyb Matching Probes None
C34B2.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10707731-10711852(-) 97.21 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97541 Hypothetical protein C34B2.9 [Caenorhabditis elegans] ref|NP_492803.1| C34B2.9 [Caenorhabditis elegans] 2.0E-64
blast CAE67347 Hypothetical protein CBG12810 [Caenorhabditis briggsae] 5.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007252 1 201-223
GENEFINDER00000007256 1 201-223
Sequence
Target Sequence 
>C. ELEGANS:183071_AT
tagcttcaccggtctacgagaacgtagaagaactaacaggactatgttctcgaagttgga
agatgatgggaaaacggagttcaaaaccttcgatgagcgattttttggctcaattgccac
ctcctccaccttcttttgatgaaaaaagtgaacgttatggtgcaggatttgggaaaagag
tggtagaatcctccacctcaacagcttcatcatcagcatcatcccgtcgtccaataatct
cttcaaataatccaccctcttcgtcacctgttcctcttcatgtctcatcatctacaatcc
ctcctccacctcttccacctcttccaacaactcttcattcaaattctcagatttctcgtt
gtttcgacatgcgtcctctgtcacttccccataaagaaatgcagagaatcgaacgagaac
agtcacacaggtcggtcacacttcttattcctaatcggtttgatattcctgattattatg
catatactcccgcatgcaatgcaagagtgctgataataacactgttgataatcacaatat
tcattgtgatgattgcactgggtatctacacattctacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTTCACCGGTCTACGAGAACGT 63 651 107 Antisense
CTCCTCCACCTTCTTTTGATGAAAA 498 233 227 Antisense
GAGTGGTAGAATCCTCCACCTCAAC 114 401 284 Antisense
TCATGTCTCATCATCTACAATCCCT 344 623 384 Antisense
AATTCTCAGATTTCTCGTTGTTTCG 169 177 448 Antisense
TTTCTCGTTGTTTCGACATGCGTCC 395 671 458 Antisense
CTCTGTCACTTCCCCATAAAGAAAT 608 231 482 Antisense
GAGAACAGTCACACAGGTCGGTCAC 609 389 521 Antisense
TCGGTCACACTTCTTATTCCTAATC 565 603 538 Antisense
GCATATACTCCCGCATGCAATGCAA 286 309 586 Antisense
GCACTGGGTATCTACACATTCTACG 320 315 661 Antisense
Sequence Source Affymetrix Proprietary Database