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[183070_at] 7TM receptor, srx family

Description F55B12.7 /REP_DB=WormBase Gene ID /WP=CE11146 /TR=Q93798 /GB=CAB02128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 13      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 36.8
(-3)
A 		65.1
(3)
A 		55.2
(0.9)
A 		47.6
(-0.7)
P 		28
B 89.1
(0.7)
M 		36.4
(-2.4)
A 		26
(-3)
A 		128.8
(3)
P 		103
C 80.9
(0.5)
P 		15.1
(-3)
A 		30.8
(-2.2)
A 		127.3
(3)
P 		112
avr 68.9
(-0) 		38.9
(-2.8) 		37.3
(-3) 		101.2
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 73.4
(3)
P 		3.5
(-3)
A 		53.1
(1.3)
M 		59.2
(1.8)
A 		51.2
(1.1)
P 		4.3
(-2.9)
A 		70
B 37.5
(-2.7)
A 		37.1
(-2.7)
A 		33.6
(-3)
A 		105.8
(3)
M 		65.8
(-0.3)
P 		37.3
(-2.7)
A 		72
C 48
(0.1)
P 		53.7
(0.6)
A 		24.7
(-2.1)
A 		31.7
(-1.5)
A 		79
(3)
A 		15.6
(-3)
A 		63
avr 53
(1.4) 		31.4
(-1.4) 		37.1
(-0.7) 		65.6
(3) 		65.3
(3) 		19.1
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.4
(2.2)
A 		14.1
(2.8)
A 		14.4
(3)
A 		7
(-3)
P 		7
B 28.4
(3)
M 		9
(-2.2)
A 		6
(-3)
A 		27.5
(2.8)
P 		22
C 26.8
(3)
P 		4.3
(-3)
A 		10.7
(-1.3)
A 		21.5
(1.6)
P 		23
avr 22.9
(3) 		9.1
(-3) 		10.4
(-2.4) 		18.7
(1.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.5
(2.2)
P 		1.2
(-3)
A 		11.6
(1.4)
M 		15
(2.8)
A 		15.4
(3)
P 		1.1
(-3)
A 		14
B 13
(-1.5)
A 		12.4
(-1.7)
A 		8.2
(-3)
A 		28
(3)
M 		26.7
(2.6)
P 		13.9
(-1.3)
A 		20
C 17.8
(0.7)
P 		16.4
(0.3)
A 		6.3
(-2.7)
A 		6.4
(-2.6)
A 		25.6
(3)
A 		5.2
(-3)
A 		20
avr 14.8
(0.1) 		10
(-1.8) 		8.7
(-2.2) 		16.5
(0.7) 		22.6
(3) 		6.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14076
Sequence Type Exemplar sequence
Representative Public ID F55B12.7 NCBI
Target Description F55B12.7 /REP_DB=WormBase Gene ID /WP=CE11146 /TR=Q93798 /GB=CAB02128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074025 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-128) (srx-128) mRNA, complete cds. 11/11 None
GENEFINDER00000009653 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13839851:13841469:1 9/11 None
F55B12.7 ENSEMBL cdna:known chromosome:CEL140:V:13840062:13841271:1 gene:F55B12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13837464-13841108(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-128
Ensembl F55B12.7
Entrez Gene 186283 Entrez gene
SwissProt Q93798 EMBL-EBI
WormBase CE36308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02128 Hypothetical protein F55B12.7 [Caenorhabditis elegans] ref|NP_506426.2| Serpentine Receptor, class X family member (srx-128) [Caenorhabditis elegans] 0.0
blast CAB02128 Hypothetical protein F55B12.7 [Caenorhabditis elegans] ref|NP_506426.2| Serpentine Receptor, class X family member (srx-128) [Caenorhabditis elegans] 1.0E-149
blast CAF31478 Hypothetical protein F55B12.9 [Caenorhabditis elegans] ref|NP_001023977.1| Serpentine Receptor, class X family member (srx-129) [Caenorhabditis elegans] 2.0E-94
blast CAF31478 Hypothetical protein F55B12.9 [Caenorhabditis elegans] ref|NP_001023977.1| Serpentine Receptor, class X family member (srx-129) [Caenorhabditis elegans] 6.0E-89
blast CAE66228 Hypothetical protein CBG11471 [Caenorhabditis briggsae] 9.0E-86
blast CAE66228 Hypothetical protein CBG11471 [Caenorhabditis briggsae] 3.0E-83
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506426.2 7 43-62,83-102,122-144,156-178,226-248,269-291,301-323
F55B12.7 7 43-62,83-102,122-144,156-178,226-248,269-291,301-323
GENEFINDER00000009653 7 31-53,74-93,113-135,147-169,201-223,244-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:183070_AT
tggaacatgggcctacctgttgacaccaattctccaagtttctatgtcgtgtaatcgttt
ttatgtactatattttccttttgggataaagttagtgaaaaaagtaccaatgacaaatgt
cataattactatcgcatcattatctgtttccatagtagccgcaacaactttaccaagtga
gttgcacacttcgaacttgaaaaattatttttggtcgtgttcagaaggatgcggttatgt
ttatgaccccgagtttcttcaatggattcctgaggaaggaaaatgtgctgaaacggtttc
cagcggtataaattatgcaataatcattttcacaatttcttcaaactcttttaatatcgc
aacagcttctcgtctcttgatgagaaaaatagtgggacttacaaaacaagattcgtcgaa
aagaagaaaacgatggatgattatgtttttgcagagcgtcatgcaagactgtctacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACATGGGCCTACCTGTTGACA 591 547 900 Antisense
ACCTGTTGACACCAATTCTCCAAGT 245 89 914 Antisense
ATTCTCCAAGTTTCTATGTCGTGTA 308 9 928 Antisense
TATGTACTATATTTTCCTTTTGGGA 183 655 961 Antisense
ACTATCGCATCATTATCTGTTTCCA 82 103 1027 Antisense
TTATCTGTTTCCATAGTAGCCGCAA 517 679 1039 Antisense
GTAGCCGCAACAACTTTACCAAGTG 493 455 1054 Antisense
GTGAGTTGCACACTTCGAACTTGAA 28 483 1076 Antisense
TATGTTTATGACCCCGAGTTTCTTC 330 653 1135 Antisense
TAATATCGCAACAGCTTCTCGTCTC 144 635 1251 Antisense
GAGCGTCATGCAAGACTGTCTACAT 480 385 1353 Antisense
Sequence Source Affymetrix Proprietary Database