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[183068_at]

Description T17A3.6 /REP_DB=WormBase Gene ID /WP=CE19583 /TR=O76693 /GB=AAC26952.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 26.6
(3)
A 		0.9
(-3)
A 		2.7
(-2.6)
A 		14.4
(0.2)
A 		26
B 27.7
(2.9)
A 		6.8
(-2.4)
A 		4.3
(-3)
A 		28.1
(3)
A 		24
C 5.2
(-3)
A 		13.5
(-1.6)
A 		9.7
(-2.3)
A 		41.2
(3)
A 		36
avr 19.8
(0.8) 		7.1
(-2.6) 		5.6
(-3) 		27.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 12.5
(-2.6)
A 		6.4
(-3)
A 		29.1
(-1.5)
A 		22.5
(-2)
A 		25.5
(-1.8)
A 		98.5
(3)
P 		92
B 6.6
(-2.7)
A 		12.8
(-2.2)
A 		38
(-0.1)
A 		2.3
(-3)
A 		10.2
(-2.4)
A 		77
(3)
P 		75
C 22.2
(-0.7)
A 		21.4
(-0.8)
A 		23.9
(-0.5)
A 		1.5
(-3)
A 		22.4
(-0.7)
A 		54.9
(3)
P 		53
avr 13.8
(-2.6) 		13.5
(-2.6) 		30.3
(-1.1) 		8.8
(-3) 		19.4
(-2.1) 		76.8
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.7
(3)
A 		0.2
(-3)
A 		0.7
(-2.7)
A 		2.1
(-1.8)
A 		10
B 8.8
(3)
A 		1.7
(-2.5)
A 		1
(-3)
A 		6
(0.8)
A 		8
C 1.7
(-3)
A 		3.9
(-0.5)
A 		3.4
(-1)
A 		6.9
(3)
A 		5
avr 6.7
(3) 		1.9
(-2.8) 		1.7
(-3) 		5
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.3
(-3)
A 		2.3
(-3)
A 		6.3
(-1.9)
A 		5.7
(-2.1)
A 		7.7
(-1.5)
A 		24
(3)
P 		22
B 2.3
(-2.6)
A 		4.3
(-2.2)
A 		9.2
(-1.2)
A 		0.6
(-3)
A 		4.1
(-2.3)
A 		28.7
(3)
P 		28
C 8.2
(-0.4)
A 		6.5
(-0.9)
A 		6.1
(-1.1)
A 		0.3
(-3)
A 		7.3
(-0.7)
A 		18.4
(3)
P 		18
avr 4.3
(-2.4) 		4.4
(-2.4) 		7.2
(-1.6) 		2.2
(-3) 		6.4
(-1.8) 		23.7
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8235
Sequence Type Exemplar sequence
Representative Public ID T17A3.6 NCBI
Target Description T17A3.6 /REP_DB=WormBase Gene ID /WP=CE19583 /TR=O76693 /GB=AAC26952.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064755 NCBI Caenorhabditis elegans T17A3.6 (T17A3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000008197 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:139643:153417:-1 11/11 None
T17A3.6 ENSEMBL cdna:known chromosome:CEL140:III:143630:144791:-1 gene:T17A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:143629-144819(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.6
Entrez Gene 188567 Entrez gene
SwissProt O76693 EMBL-EBI
WormBase CE29343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 0.0
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 0.0
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 0.0
blast AAC26952 Hypothetical protein T17A3.6 [Caenorhabditis elegans] ref|NP_497156.1| T17A3.6 [Caenorhabditis elegans] 1.0E-157
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 2.0E-94
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 1.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 2.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 9.6E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008197 1 298-320
Sequence
Target Sequence 
>C. ELEGANS:183068_AT
ggttttacgtttcgaacagtacatgtttgctctattttcatggaagatcttaagtttcat
agagacatattgatgaagtattcgcgccaatttaataagcttactctagactatcattca
ttgaaatctcaagagtttcactcaattctcagtcttaactacgatagattttgcctggaa
aaagctaccaaactagaagatttattggtttcaaatatttccgaaatgcacattgattat
ccatcacccttaaaacaggtatgtctattcctgaagcattggattaatggatcaaacaaa
cgattggaatatcttgaaataaaacttcccgccagatcaactgaaacccaatttatttcg
attgccttgaatggtattaaatatcaattggcaccaattgacaaaaagtgggagtttctc
aataataggtttataaaaaccactgtcgttaaagctggaggatatgatatcagacaaaac
gatggaaccattgcaactgtcactttttatgaagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTACGTTTCGAACAGTACATG 159 505 304 Antisense
ACAGTACATGTTTGCTCTATTTTCA 140 107 319 Antisense
GATGAAGTATTCGCGCCAATTTAAT 389 411 375 Antisense
AATAAGCTTACTCTAGACTATCATT 243 169 397 Antisense
TTCACTCAATTCTCAGTCTTAACTA 445 685 440 Antisense
TAACTACGATAGATTTTGCCTGGAA 203 639 459 Antisense
GCACATTGATTATCCATCACCCTTA 438 315 531 Antisense
AGGTATGTCTATTCCTGAAGCATTG 550 55 560 Antisense
GAAATAAAACTTCCCGCCAGATCAA 5 359 619 Antisense
TTCCCGCCAGATCAACTGAAACCCA 205 685 629 Antisense
GCAACTGTCACTTTTTATGAAGCCT 463 319 796 Antisense
Sequence Source Affymetrix Proprietary Database