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[183067_s_at]

Description F58F6.6 /REP_DB=WormBase Gene ID /WP=CE17141 /TR=O44177 /GB=AAB88362.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 24.1
(-2.8)
A 		18.4
(-3)
A 		69.5
(-1)
A 		168.4
(3)
P 		150
B 14.8
(-2.2)
A 		6.6
(-3)
A 		16.9
(-1.9)
A 		65.1
(3)
P 		59
C 46.6
(-2.2)
A 		35.4
(-2.5)
A 		15.3
(-3)
A 		261
(3)
P 		246
avr 28.5
(-2.7) 		20.1
(-3) 		33.9
(-2.4) 		164.8
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 19
(-3)
A 		51.5
(-0.3)
A 		68
(1)
P 		27.9
(-2.3)
A 		92.3
(3)
P 		24.2
(-2.6)
A 		73
B 15.5
(-3)
A 		42.9
(-1.3)
A 		29.6
(-2.1)
A 		71.9
(0.6)
P 		110.7
(3)
P 		40.8
(-1.4)
A 		95
C 3.3
(-3)
A 		79.2
(3)
P 		64.9
(1.9)
A 		28.3
(-1)
A 		54.4
(1)
P 		26.9
(-1.1)
A 		76
avr 12.6
(-3) 		57.9
(0.7) 		54.2
(0.4) 		42.7
(-0.5) 		85.8
(3) 		30.6
(-1.5) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 8.8
(-1.6)
A 		4
(-3)
A 		18.2
(1.1)
A 		24.6
(3)
P 		21
B 4.7
(-1.5)
A 		1.6
(-3)
A 		3.9
(-1.9)
A 		13.9
(3)
P 		12
C 15.4
(-1.4)
A 		10.2
(-2.2)
A 		5.3
(-3)
A 		44
(3)
P 		39
avr 9.6
(-1.8) 		5.3
(-3) 		9.1
(-2) 		27.5
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.5
(-3)
A 		18.3
(0.7)
A 		14.8
(-0.2)
P 		7.1
(-2.1)
A 		27.8
(3)
P 		5.9
(-2.4)
A 		24
B 5.4
(-3)
A 		14.3
(-1.7)
A 		7.2
(-2.7)
A 		19
(-0.9)
P 		45
(3)
P 		15.2
(-1.5)
A 		40
C 1.2
(-3)
A 		24.2
(3)
P 		16.5
(1)
A 		5.7
(-1.8)
A 		17.6
(1.3)
P 		9
(-1)
A 		23
avr 3.4
(-3) 		18.9
(0.5) 		12.8
(-0.9) 		10.6
(-1.4) 		30.1
(3) 		10
(-1.5) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183067_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10872
Sequence Type Exemplar sequence
Representative Public ID F58F6.6 NCBI
Target Description F58F6.6 /REP_DB=WormBase Gene ID /WP=CE17141 /TR=O44177 /GB=AAB88362.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072845(11), NM_067666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072845 NCBI Caenorhabditis elegans ZC196.9 (ZC196.9) mRNA, complete cds. 11/11 None
NM_067666 NCBI Caenorhabditis elegans F58F6.6 (F58F6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000017991 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1341215:1344827:1 11/11 None
GENEFINDER00000023111 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8726110:8727752:-1 11/11 None
F58F6.6 ENSEMBL cdna:known chromosome:CEL140:IV:1341215:1342860:1 gene:F58F6.6 11/11 None
ZC196.9 ENSEMBL cdna:known chromosome:CEL140:V:8726110:8728489:-1 gene:ZC196.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1341220-1342866(+) 100.0 100.0
chrV:8726110-8727753(-) 99.7 99.7
Public Domain and Genome References
Gene Title

Ensembl F58F6.6
ZC196.9
Entrez Gene 186532 Entrez gene
191107 Entrez gene
SwissProt O44177 EMBL-EBI
O01625 EMBL-EBI
WormBase CE17141 Wormbase
CE15082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 0.0
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-168
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-165
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-164
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-161
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-159
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.1E-102
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.2E-102
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 3.1E-22
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 2.2E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505246.1 7 75-97,104-126,146-168,188-210,251-273,285-307,322-341
NP_500067.1 7 32-54,61-83,103-125,145-164,208-230,242-264,279-298
F58F6.6 7 32-54,61-83,103-125,145-164,208-230,242-264,279-298
ZC196.9 7 75-97,104-126,146-168,188-210,251-273,285-307,322-341
GENEFINDER00000017991 9 32-54,61-83,103-125,145-164,208-230,242-264,279-298,387-409,419-441
GENEFINDER00000023111 7 32-54,61-83,103-125,145-167,208-230,242-264,279-298
Sequence
Target Sequence 
>C. ELEGANS:183067_S_AT
gacggataggttcttcgagtcaaaagttatatatatttggatttcaagtatctacatatt
tgcttttggtgtggaatatgcattaatgtcttcaaattgtcaatatcgctttggtgaact
tgctagaaaataccaattgatttgtgaaacaaccaattatgcaaatgtcgttatcacaat
gacaacccctaccgaagttcaacttatggaaactatgcttcaaattttccttcctttgtc
tatacttatcatatatattgccataactgtcaaaataatatatatgaaaggcagcacact
gagcaaaaacgaaactctgatattaaagcaagctatttttgtatttttaatttttcaagc
atcgtcttgtgtgtttttatttgctcaatctgttcaaattacaaatgttggagctttttt
agtcaagcgttttgtaaatacgatggaaatacttgccggtgcagccacaccttcattttt
ctttttcacatcgaaagaaatacggaaacttgtttccactagagtttcagctgtcagctc
acaaggaccgtcgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGATAGGTTCTTCGAGTCAAAA 195 367 420 Antisense
GGATTTCAAGTATCTACATATTTGC 201 509 458 Antisense
ATATCGCTTTGGTGAACTTGCTAGA 161 21 522 Antisense
CGTTATCACAATGACAACCCCTACC 385 243 588 Antisense
ACTATGCTTCAAATTTTCCTTCCTT 60 103 631 Antisense
TTCCTTCCTTTGTCTATACTTATCA 229 701 646 Antisense
ATCATATATATTGCCATAACTGTCA 235 31 667 Antisense
TCAAGCATCGTCTTGTGTGTTTTTA 50 633 774 Antisense
GTTGGAGCTTTTTTAGTCAAGCGTT 334 435 826 Antisense
TCAGCTGTCAGCTCACAAGGACCGT 350 621 946 Antisense
GTCAGCTCACAAGGACCGTCGAACA 132 459 952 Antisense
Sequence Source Affymetrix Proprietary Database