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[183066_at]

Description F13B9.8 /REP_DB=WormBase Gene ID /WP=CE04385 /TR=Q19383 /GB=AAK39224.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 42      6grp_total > 60      4grp_total > 50      6grp_highest_sub > 03_04      6grp_cgc > 94      6grp_high1_sub > 03_04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 576.9
(-3)
P 		618.9
(1.5)
P 		633
(3)
P 		606.1
(0.1)
P 		56
B 613.6
(0.4)
P 		615.3
(0.6)
P 		652.7
(3)
P 		561.1
(-3)
P 		92
C 590.8
(-1.1)
P 		649.5
(3)
P 		563.4
(-3)
P 		573.6
(-2.3)
P 		86
avr 593.8
(-1.3) 		627.9
(3) 		616.4
(1.6) 		580.3
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 945.6
(2.1)
P 		659.7
(-3)
P 		998.4
(3)
P 		893.4
(1.1)
P 		690.9
(-2.4)
P 		680.1
(-2.6)
P 		339
B 764.6
(-0.3)
P 		773.7
(-0.2)
P 		906.6
(2.1)
P 		961.3
(3)
P 		840.1
(1)
P 		604.5
(-3)
P 		357
C 716
(-1.4)
P 		800.2
(-0.4)
P 		919.7
(1)
P 		1085.6
(3)
P 		579.4
(-3)
P 		704.5
(-1.5)
P 		506
avr 808.7
(-0.2) 		744.5
(-1.5) 		941.6
(2.3) 		980.1
(3) 		703.5
(-2.2) 		663
(-3) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 210
(3)
P 		134.4
(-0.7)
P 		165.5
(0.8)
P 		88.7
(-3)
P 		121
B 195.7
(3)
P 		152
(-0.4)
P 		151.3
(-0.5)
P 		119.6
(-3)
P 		76
C 195.6
(3)
P 		186.7
(2.4)
P 		196.4
(3)
P 		96.7
(-3)
P 		100
avr 200.4
(3) 		157.7
(0.4) 		171.1
(1.2) 		101.7
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 174.3
(-2.2)
P 		234.6
(3)
P 		217.4
(1.5)
P 		226.6
(2.3)
P 		208.5
(0.7)
P 		165.6
(-3)
P 		69
B 266
(-0.7)
P 		257.5
(-1.1)
P 		220.1
(-3)
P 		254.6
(-1.3)
P 		341.3
(3)
P 		225.4
(-2.7)
P 		121
C 265.4
(3)
P 		244.2
(1.4)
P 		234.1
(0.6)
P 		218.3
(-0.6)
P 		187.5
(-3)
P 		235.8
(0.7)
P 		78
avr 235.2
(1.3) 		245.4
(2.9) 		223.9
(-0.6) 		233.2
(1) 		245.8
(3) 		208.9
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16041
Sequence Type Exemplar sequence
Representative Public ID F13B9.8 NCBI
Target Description F13B9.8 /REP_DB=WormBase Gene ID /WP=CE04385 /TR=Q19383 /GB=AAK39224.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029389(11), NM_001029388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029389 NCBI Caenorhabditis elegans S. cerevisiae FIS1-related family member (fis-2) (fis-2) mRNA, complete cds. 11/11 None
NM_001029388 NCBI Caenorhabditis elegans S. cerevisiae FIS1-related family member (fis-2) (fis-2) mRNA, complete cds. 11/11 None
SNAP00000009669 ENSEMBL cdna:SNAP chromosome:CEL140:X:8283373:8283970:-1 9/11 None
GENEFINDER00000009673 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8283373:8285139:-1 11/11 None
F13B9.8b ENSEMBL cdna:known chromosome:CEL140:X:8283225:8285156:-1 gene:F13B9.8 11/11 None
F13B9.8a ENSEMBL cdna:known chromosome:CEL140:X:8283245:8284788:-1 gene:F13B9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009670 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8283371-8284787(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13B9.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92078 S. cerevisiae fis1-related protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024560.1| S. cerevisiae FIS1-related family member (fis-2) [Caenorhabditis elegans] 4.0E-67
blast AAK39224 S. cerevisiae fis1-related protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024559.1| S. cerevisiae FIS1-related family member (fis-2) [Caenorhabditis elegans] 2.0E-59
blast AAK39224 S. cerevisiae fis1-related protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024559.1| S. cerevisiae FIS1-related family member (fis-2) [Caenorhabditis elegans] 5.0E-57
blast AAT92078 S. cerevisiae fis1-related protein 2, isoform b [Caenorhabditis elegans] ref|NP_001024560.1| S. cerevisiae FIS1-related family member (fis-2) [Caenorhabditis elegans] 6.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024560.1 1 126-148
NP_001024559.1 1 113-135
F13B9.8b 1 126-148
F13B9.8a 1 113-135
SNAP00000009669 1 77-99
GENEFINDER00000009673 1 126-148
Sequence
Target Sequence 
>C. ELEGANS:183066_AT
gctcgtgagcagtacatgcgccaatgtgctcgtggagatcctagcgccgcgtcgactttt
gcctttgcacatgccatgattggatccaagaacaaactggacgtgaaggagggaatcgtg
tgtcttgagaagcttctccgcgacgatgaggacagaacgagcaagcgcaactacgtctac
tatttggcagtggcacatgctcgtatcaagcaatacgaccttgcattgggatacatcgac
gtgcttcttgacgccgaaggcgataaccagcaggcgaagacgttgaaggaaagtatcaaa
tccgcaatgactcatgatggcctcattggtgcagctattgttggaggaggagcacttgca
cttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGTGAGCAGTACATGCGCCAAT 542 299 28 Antisense
TTTTGCCTTTGCACATGCCATGATT 418 677 84 Antisense
GCTTCTCCGCGACGATGAGGACAGA 576 305 159 Antisense
GAGCAAGCGCAACTACGTCTACTAT 50 391 186 Antisense
TTGGCAGTGGCACATGCTCGTATCA 372 709 211 Antisense
ATACGACCTTGCATTGGGATACATC 635 21 240 Antisense
GGGATACATCGACGTGCTTCTTGAC 33 497 255 Antisense
GGCGATAACCAGCAGGCGAAGACGT 464 541 286 Antisense
ATCCGCAATGACTCATGATGGCCTC 646 37 327 Antisense
ATGATGGCCTCATTGGTGCAGCTAT 280 45 341 Antisense
TGGAGGAGGAGCACTTGCACTTGCC 102 551 369 Antisense
Sequence Source Affymetrix Proprietary Database