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[183064_at]

Description F17H10.2 /REP_DB=WormBase Gene ID /WP=CE03227 /TR=Q19531 /GB=CAA93649.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 98      6grp_total > 68      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1453
1 2 3 4 range
A 1107.8
(-0.9)
P 		798.9
(-2.2)
P 		596.3
(-3)
P 		2049.4
(3)
P 		1453
B 1057.6
(-1.2)
P 		826
(-2.2)
P 		647.4
(-3)
P 		2001.1
(3)
P 		1354
C 1175
(-0.2)
P 		791
(-2.2)
P 		647.2
(-3)
P 		1773.8
(3)
P 		1127
avr 1113.5
(-0.8) 		805.3
(-2.2) 		630.3
(-3) 		1941.4
(3) 		1311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1677
1 2 3 4 5 6 range
A 990.3
(-1.7)
P 		846.4
(-2.2)
P 		730.8
(-2.6)
P 		637
(-3)
P 		1010.4
(-1.6)
P 		2225.9
(3)
P 		1589
B 922.5
(-1.7)
P 		774.4
(-2.3)
P 		615.7
(-3)
P 		619.1
(-3)
P 		956
(-1.6)
P 		2034.1
(3)
P 		1418
C 909.2
(-1.5)
P 		784.1
(-2)
P 		549.4
(-3)
P 		632.9
(-2.7)
P 		890.4
(-1.6)
P 		2015.7
(3)
P 		1466
avr 940.7
(-1.7) 		801.6
(-2.3) 		632
(-3) 		629.7
(-3) 		952.3
(-1.7) 		2091.9
(3) 		1462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 403.3
(3)
P 		173.4
(-2.6)
P 		155.9
(-3)
P 		300
(0.5)
P 		247
B 337.3
(1.1)
P 		204
(-1.8)
P 		150
(-3)
P 		426.4
(3)
P 		276
C 389
(3)
P 		227.4
(-2.9)
P 		225.6
(-3)
P 		299.1
(-0.3)
P 		163
avr 376.5
(3) 		201.6
(-2.3) 		177.2
(-3) 		341.8
(2) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 182.6
(-2.6)
P 		301
(-0.8)
P 		159.2
(-3)
P 		161.6
(-3)
P 		304.9
(-0.7)
P 		541.9
(3)
P 		383
B 321
(-1.3)
P 		257.8
(-1.9)
P 		149.5
(-3)
P 		164
(-2.9)
P 		388.4
(-0.6)
P 		758.5
(3)
P 		609
C 337
(-0.7)
P 		239.3
(-1.8)
P 		139.8
(-2.9)
P 		127.3
(-3)
P 		288.1
(-1.2)
P 		674.8
(3)
P 		548
avr 280.2
(-1.5) 		266
(-1.6) 		149.5
(-3) 		151
(-3) 		327.1
(-0.9) 		658.4
(3) 		509
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17908
Sequence Type Exemplar sequence
Representative Public ID F17H10.2 NCBI
Target Description F17H10.2 /REP_DB=WormBase Gene ID /WP=CE03227 /TR=Q19531 /GB=CAA93649.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077777 NCBI Caenorhabditis elegans F17H10.2 (F17H10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001677 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13113856:13115988:1 11/11 None
F17H10.2 ENSEMBL cdna:known chromosome:CEL140:X:13113856:13116267:1 gene:F17H10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001672 8/11 Cross Hyb Matching Probes None
SNAP00000001673 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13113855-13115988(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17H10.2
Entrez Gene 184623 Entrez gene
SwissProt Q19531 EMBL-EBI
WormBase CE03227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93649 Hypothetical protein F17H10.2 [Caenorhabditis elegans] ref|NP_510178.1| F17H10.2 [Caenorhabditis elegans] 1.0E-111
blast CAE61386 Hypothetical protein CBG05235 [Caenorhabditis briggsae] 5.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510178.1 4 76-98,103-125,132-154,197-219
F17H10.2 4 76-98,103-125,132-154,197-219
GENEFINDER00000001677 4 76-98,103-125,132-154,197-219
Sequence
Target Sequence 
>C. ELEGANS:183064_AT
ttcaggcacacggatcccaaatacaaatgtctatgcaataaaatgcacgtcaagcaagga
tgtaaatgtattctagctttcctagtcattgttgtaattatcgctgctcttctgctcatc
cttaactggaacattggaacatggacgacactcatcattcatgcaattcttctccttgga
gtcattgcatgtgctggtgcattattccttgccatgaagaccgaaaaagaaaaccttttg
ttgccagtcgctggaattgctgttcttggagcaatcgtgtcaattgtattcctggtgttt
actatttggtctttgatcgaaccaagcggtgttacaggacaactggtcaataattttgtt
gtaagccaaaatgcatcaatgacagacgaccaaggtttagaagaaaatagagaagatatc
caaacagtttctgccattagcgtcgttctctcgttggctggacttgccgccagtctttgg
gtggcatttgtggtttacaaatactacatgtatttgaaggacatgaagttcgcaagagtc
ccgaaaaatcaggtccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGGCACACGGATCCCAAATACA 507 687 172 Antisense
GTTGTAATTATCGCTGCTCTTCTGC 473 437 262 Antisense
TCTTCTGCTCATCCTTAACTGGAAC 222 617 279 Antisense
GGAACATGGACGACACTCATCATTC 133 529 307 Antisense
ATCATTCATGCAATTCTTCTCCTTG 379 31 325 Antisense
TTCTCCTTGGAGTCATTGCATGTGC 557 691 341 Antisense
TGTGCTGGTGCATTATTCCTTGCCA 57 557 361 Antisense
AGAAAACCTTTTGTTGCCAGTCGCT 574 71 399 Antisense
AACAGTTTCTGCCATTAGCGTCGTT 497 135 594 Antisense
CTTGCCGCCAGTCTTTGGGTGGCAT 31 219 634 Antisense
GAGTCCCGAAAAATCAGGTCCACAT 20 397 707 Antisense
Sequence Source Affymetrix Proprietary Database