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[183063_at]

Description F54H5.5 /REP_DB=WormBase Gene ID /WP=CE01968 /TR=P91331 /GB=AAB38095.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 56      4grp_high_8_8 > 27      6grp_highest_nonorm > 80      6grp_total > 60      4grp_total > 37      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 316.2
(3)
P 		239
(-2.1)
P 		239.4
(-2.1)
P 		225.9
(-3)
P 		90
B 179.9
(-2.6)
P 		319.1
(3)
P 		169.4
(-3)
P 		239.6
(-0.2)
P 		150
C 303.3
(3)
P 		239.4
(-1.6)
P 		220.6
(-3)
P 		244.3
(-1.3)
P 		83
avr 266.5
(3) 		265.8
(2.9) 		209.8
(-3) 		236.6
(-0.2) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 225.1
(1)
P 		190
(-2.5)
P 		234.6
(1.9)
P 		216.3
(0.1)
P 		246
(3)
P 		184.5
(-3)
P 		62
B 219.5
(0.5)
P 		210.5
(-0.5)
P 		202.6
(-1.4)
P 		240.4
(3)
P 		189.3
(-3)
P 		191.5
(-2.7)
P 		51
C 217.1
(-0.9)
P 		236.9
(1.4)
P 		230.1
(0.6)
P 		250.9
(3)
P 		198.8
(-3)
P 		211
(-1.6)
P 		52
avr 220.6
(0.7) 		212.5
(-0.5) 		222.4
(1) 		235.9
(3) 		211.4
(-0.7) 		195.7
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 115.1
(3)
P 		51.9
(-1.6)
P 		62.6
(-0.8)
P 		33.1
(-3)
P 		82
B 57.4
(-0.3)
P 		78.8
(3)
P 		39.3
(-3)
P 		51.1
(-1.2)
P 		40
C 100.4
(3)
P 		68.8
(-0.2)
P 		76.9
(0.6)
P 		41.2
(-3)
P 		59
avr 91
(3) 		66.5
(0) 		59.6
(-0.8) 		41.8
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 41.5
(-3)
P 		67.6
(1.8)
P 		51.1
(-1.2)
P 		54.9
(-0.5)
P 		74.2
(3)
P 		44.9
(-2.4)
P 		33
B 76.4
(2.9)
P 		70.1
(1.5)
P 		49.2
(-3)
P 		63.7
(0.1)
P 		76.9
(3)
P 		71.4
(1.8)
P 		28
C 80.5
(3)
P 		72.3
(1.4)
P 		58.6
(-1.4)
P 		50.5
(-3)
P 		64.3
(-0.2)
P 		70.6
(1)
P 		30
avr 66.1
(1.2) 		70
(2.4) 		53
(-3) 		56.4
(-1.9) 		71.8
(3) 		62.3
(-0) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4870
Sequence Type Exemplar sequence
Representative Public ID F54H5.5 NCBI
Target Description F54H5.5 /REP_DB=WormBase Gene ID /WP=CE01968 /TR=P91331 /GB=AAB38095.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062945 NCBI Caenorhabditis elegans F54H5.5 (F54H5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000010670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6623427:6627172:-1 11/11 None
F54H5.5 ENSEMBL cdna:known chromosome:CEL140:II:6623427:6626854:-1 gene:F54H5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010664 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6623423-6626851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54H5.5
Entrez Gene 186265 Entrez gene
SwissProt P91331 EMBL-EBI
WormBase CE01968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB38095 Hypothetical protein F54H5.5 [Caenorhabditis elegans] ref|NP_495346.1| F54H5.5 [Caenorhabditis elegans] 0.0
blast CAE60657 Hypothetical protein CBG04309 [Caenorhabditis briggsae] 1.0E-180
blast CAB00026 Hypothetical protein D1081.5 [Caenorhabditis elegans] ref|NP_492299.1| D1081.5 [Caenorhabditis elegans] 1.0E-80
blast CAB00026 Hypothetical protein D1081.5 [Caenorhabditis elegans] ref|NP_492299.1| D1081.5 [Caenorhabditis elegans] 6.0E-66
Sequence
Target Sequence 
>C. ELEGANS:183063_AT
ttcaaaaaagccccatacacgtcatctaccaaacaaatccggtattttctggaaggagaa
attgaatatccggcaagtgagccagctgtatttttaccaaacgaagtttcggatgagatt
ccaaaacgccatgttgcgtatcatattcatgaaaaacttctcgcagaaatgctcgaggcg
atgtgtgaaaaaggattattcgacggaaactttacctccctcccatcaatgaaaccagta
agctatctttgtttgagtgcaagtgcaaagatacaaggaatatcaaacacaataacaata
ataattcacataaccagtctggagacttatccggatgaccaagaaaagtctcaactacgc
agttttatggtgactccattgcacaacagtgagcatgagctcttcatccggttaaaatct
caattggcgaatcgatggctggacaatacgtttacagaacagctattcaatcatctctcc
gtagttctttctgacaatttccgtctacctctgcccttcattcataactcatcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAAAAAGCCCCATACACGTCAT 611 683 1372 Antisense
ACACGTCATCTACCAAACAAATCCG 192 111 1388 Antisense
GAGCCAGCTGTATTTTTACCAAACG 288 385 1450 Antisense
CTCCCTCCCATCAATGAAACCAGTA 20 235 1587 Antisense
GTCTGGAGACTTATCCGGATGACCA 359 471 1688 Antisense
ATGGTGACTCCATTGCACAACAGTG 296 51 1738 Antisense
TGAGCTCTTCATCCGGTTAAAATCT 136 569 1767 Antisense
AGAACAGCTATTCAATCATCTCTCC 523 73 1827 Antisense
TCTCTCCGTAGTTCTTTCTGACAAT 69 613 1845 Antisense
TTTCTGACAATTTCCGTCTACCTCT 535 671 1859 Antisense
TGCCCTTCATTCATAACTCATCGAT 236 585 1883 Antisense
Sequence Source Affymetrix Proprietary Database