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[183061_at]

Description T12A2.6 /REP_DB=WormBase Gene ID /WP=CE01399 /TR=Q22416 /GB=AAC24445.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.4
(2.7)
A 		6.6
(-0.6)
A 		9.7
(3)
A 		4.5
(-3)
A 		5
B 10.7
(-1.8)
A 		26.6
(1.2)
A 		35.9
(3)
A 		4.4
(-3)
A 		32
C 5.1
(-2.3)
A 		4.4
(-2.4)
A 		0.9
(-3)
A 		37
(3)
A 		36
avr 8.4
(-3) 		12.5
(0.5) 		15.5
(3) 		15.3
(2.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.4
(-0.8)
A 		2.7
(-2.7)
A 		10.6
(3)
A 		2.3
(-3)
A 		2.6
(-2.8)
A 		5
(-1)
A 		8
B 4.8
(0.6)
A 		1.9
(-3)
A 		6.7
(3)
A 		6.4
(2.6)
A 		3.7
(-0.8)
A 		3
(-1.6)
A 		5
C 7.8
(-2.2)
A 		15.1
(-0.2)
A 		26.7
(3)
A 		9.3
(-1.7)
A 		4.7
(-3)
A 		5.3
(-2.8)
A 		22
avr 6
(-1.7) 		6.6
(-1.4) 		14.7
(3) 		6
(-1.7) 		3.7
(-3) 		4.4
(-2.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.4
(3)
A 		1.4
(-1.4)
A 		2.5
(1)
A 		0.7
(-3)
A 		3
B 3.4
(-1)
A 		6.6
(1.6)
A 		8.3
(3)
A 		0.9
(-3)
A 		7
C 1.7
(-1.6)
A 		1.3
(-2)
A 		0.3
(-3)
A 		6.2
(3)
A 		6
avr 2.8
(-1.9) 		3.1
(-0.3) 		3.7
(3) 		2.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-1.6)
A 		1
(-1.6)
A 		2.3
(3)
A 		0.6
(-3)
A 		0.8
(-2.3)
A 		1.2
(-0.9)
A 		2
B 1.7
(3)
A 		0.6
(-3)
A 		1.6
(2.5)
A 		1.7
(3)
A 		1.5
(1.9)
A 		1.1
(-0.3)
A 		1
C 2.9
(-1.4)
A 		4.6
(0.5)
A 		6.8
(3)
A 		1.9
(-2.5)
A 		1.5
(-3)
A 		1.8
(-2.7)
A 		5
avr 1.9
(-1.4) 		2.1
(-0.9) 		3.6
(3) 		1.4
(-2.7) 		1.3
(-3) 		1.4
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7712
Sequence Type Exemplar sequence
Representative Public ID T12A2.6 NCBI
Target Description T12A2.6 /REP_DB=WormBase Gene ID /WP=CE01399 /TR=Q22416 /GB=AAC24445.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065958(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065958 NCBI Caenorhabditis elegans T12A2.6 (T12A2.6) mRNA, complete cds. 9/11 None
GENEFINDER00000026137 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6241757:6243329:-1 9/11 None
SNAP00000026124 ENSEMBL cdna:SNAP chromosome:CEL140:III:6241789:6243857:-1 9/11 None
T12A2.6 ENSEMBL cdna:known chromosome:CEL140:III:6241789:6244322:-1 gene:T12A2.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6241787-6244120(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A2.6
Entrez Gene 188434 Entrez gene
SwissProt Q22416 EMBL-EBI
WormBase CE30395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24445 Hypothetical protein T12A2.6 [Caenorhabditis elegans] ref|NP_498359.2| T12A2.6 [Caenorhabditis elegans] 0.0
blast CAE70747 Hypothetical protein CBG17493 [Caenorhabditis briggsae] 1.0E-104
blast CAE70743 Hypothetical protein CBG17488 [Caenorhabditis briggsae] 1.0E-100
blast CAE70747 Hypothetical protein CBG17493 [Caenorhabditis briggsae] 2.0E-94
blast CAE70743 Hypothetical protein CBG17488 [Caenorhabditis briggsae] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:183061_AT
tcgttcggcgctccaaagtattcgagatatttcatccactaatgaggatctcaatgaaat
tctgaaaactgttcgagacatttaccgatccagtaactctgcaaccctcttccaagatct
ttataaaattataaaatcgaatggaagctaccgagaagtatttctggcactgcaaatgct
catggaaatggagaaaccggaagtgatcactgcaaaatgcaaattcatcgattccttcta
cacaggacttcaaaacattgacaattcaatcgaagaattcggagtgatcacgagtgatat
tcaccgttggaatgaagcaacaatttctgtagatgcccttgtccaattgttgaaagcatc
aggatcgttggaaaatctgaaaaagtttctcggttaccacaatagctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTCGGCGCTCCAAAGTATTCGA 360 603 948 Antisense
GTATTCGAGATATTTCATCCACTAA 355 453 965 Antisense
AACTGTTCGAGACATTTACCGATCC 190 143 1014 Antisense
TTACCGATCCAGTAACTCTGCAACC 271 683 1029 Antisense
CAACCCTCTTCCAAGATCTTTATAA 592 187 1049 Antisense
TGCAAATTCATCGATTCCTTCTACA 436 577 1165 Antisense
GATTCCTTCTACACAGGACTTCAAA 656 425 1177 Antisense
GATCACGAGTGATATTCACCGTTGG 645 415 1233 Antisense
GCAACAATTTCTGTAGATGCCCTTG 376 319 1264 Antisense
GTAGATGCCCTTGTCCAATTGTTGA 699 455 1276 Antisense
TTCTCGGTTACCACAATAGCTACAC 124 665 1334 Antisense
Sequence Source Affymetrix Proprietary Database