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[183060_at]

Description T05A8.1 /REP_DB=WormBase Gene ID /WP=CE18197 /TR=O44860 /GB=AAB95018.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 34.5
(-0.9)
A 		11.8
(-3)
A 		41.5
(-0.3)
A 		77
(3)
A 		65
B 43.3
(3)
A 		17.5
(-1.7)
A 		10.9
(-2.9)
A 		10.6
(-3)
A 		33
C 32.4
(1)
A 		43.5
(3)
A 		10.4
(-3)
A 		22.6
(-0.8)
A 		33
avr 36.7
(3) 		24.3
(-1.7) 		20.9
(-3) 		36.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 26.5
(1.6)
A 		30.8
(2.5)
A 		33.2
(3)
A 		8.2
(-2.1)
A 		3.5
(-3)
A 		5.4
(-2.6)
A 		30
B 7.8
(-2.7)
A 		24.1
(2.9)
A 		12
(-1.3)
A 		14.7
(-0.3)
A 		24.4
(3)
A 		7
(-3)
A 		17
C 13.6
(-1.5)
A 		10
(-2.2)
A 		26.8
(0.8)
A 		38.8
(3)
A 		5.5
(-3)
A 		38.6
(3)
A 		33
avr 16
(-0.7) 		21.6
(1.9) 		24
(3) 		20.6
(1.4) 		11.1
(-3) 		17
(-0.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.6
(3)
A 		2.6
(-3)
A 		10.9
(2)
A 		11.3
(2.2)
A 		10
B 13.8
(3)
A 		4.3
(-2)
A 		2.5
(-2.9)
A 		2.3
(-3)
A 		12
C 10.7
(1.8)
A 		12.5
(3)
A 		3.6
(-3)
A 		3.8
(-2.9)
A 		9
avr 12.4
(3) 		6.5
(-2.3) 		5.7
(-3) 		5.8
(-2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.9
(-0.6)
A 		10.9
(3)
A 		7.2
(0.8)
A 		2.1
(-2.3)
A 		1
(-3)
A 		1.3
(-2.8)
A 		10
B 2.7
(-2.9)
A 		8
(1.4)
A 		2.9
(-2.8)
A 		3.9
(-1.9)
A 		9.9
(3)
A 		2.6
(-3)
A 		7
C 5
(-1.3)
A 		3
(-2.4)
A 		6.8
(-0.3)
A 		7.8
(0.2)
A 		1.8
(-3)
A 		12.9
(3)
A 		11
avr 4.2
(-3) 		7.3
(3) 		5.6
(-0.3) 		4.6
(-2.2) 		4.2
(-3) 		5.6
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5495
Sequence Type Exemplar sequence
Representative Public ID T05A8.1 NCBI
Target Description T05A8.1 /REP_DB=WormBase Gene ID /WP=CE18197 /TR=O44860 /GB=AAB95018.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061939 NCBI Caenorhabditis elegans T05A8.1 (T05A8.1) mRNA, complete cds. 11/11 None
SNAP00000017320 ENSEMBL cdna:SNAP chromosome:CEL140:II:2708560:2709339:-1 10/11 None
GENEFINDER00000017331 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2708830:2711826:-1 11/11 None
T05A8.1 ENSEMBL cdna:known chromosome:CEL140:II:2708815:2709339:-1 gene:T05A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2708813-2709338(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.1
Entrez Gene 188088 Entrez gene
SwissProt O44860 EMBL-EBI
WormBase CE18197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494341 T05A8.2 [Caenorhabditis elegans] gb|AAB95019.1| Hypothetical protein T05A8.2 [Caenorhabditis elegans] 1.0E-117
blast NP_494340 T05A8.1 [Caenorhabditis elegans] gb|AAB95018.1| Hypothetical protein T05A8.1 [Caenorhabditis elegans] 8.0E-80
blast NP_494340 T05A8.1 [Caenorhabditis elegans] gb|AAB95018.1| Hypothetical protein T05A8.1 [Caenorhabditis elegans] 3.0E-76
blast NP_494340 T05A8.1 [Caenorhabditis elegans] gb|AAB95018.1| Hypothetical protein T05A8.1 [Caenorhabditis elegans] 9.0E-62
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 9.0E-31
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 9.0E-30
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 1.0E-25
blast CAE59752 Hypothetical protein CBG03198 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017331 1 44-66
Sequence
Target Sequence 
>C. ELEGANS:183060_AT
agcaccgatcggtggatctggtccacaccgtctgatagaagataggaaggagtactggta
tgatcctcgtgttgaccgaattgtggtcgctgctgatccaccgtgtagcgatgcgctgga
aatgattgcaaatttcaatcctgatgctccggcactggatttgaacgaccttcttcggat
attcaaagctcagcaaagcaacgcgttcaacccaaaatcccgcaccgacgggggcagcta
taacaccaacgacaaacgtgtcagtagagcttcctcttattcatcacaactaccaaaagg
aactctgcaagagcaacatccaaacgtgtacctgaaagacgagcggaatccaaacggtcg
gggaggtgtccacaaggcgtattcatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACCGATCGGTGGATCTGGTCCA 264 77 39 Antisense
CTGGTCCACACCGTCTGATAGAAGA 202 241 56 Antisense
GTACTGGTATGATCCTCGTGTTGAC 417 459 90 Antisense
TCGCTGCTGATCCACCGTGTAGCGA 476 599 125 Antisense
AATCCTGATGCTCCGGCACTGGATT 353 165 175 Antisense
GCACTGGATTTGAACGACCTTCTTC 466 313 190 Antisense
TCAGCAAAGCAACGCGTTCAACCCA 435 621 228 Antisense
CGACGGGGGCAGCTATAACACCAAC 67 251 264 Antisense
CAAACGTGTCAGTAGAGCTTCCTCT 509 191 291 Antisense
TTCCTCTTATTCATCACAACTACCA 71 701 309 Antisense
GGTGTCCACAAGGCGTATTCATCTA 703 499 403 Antisense
Sequence Source Affymetrix Proprietary Database