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[183059_s_at]

Description C08A9.7 /REP_DB=WormBase Gene ID /WP=CE06789 /TR=Q17810 /GB=AAB53819.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 11      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 25.9
(-3)
A 		49.4
(-0.5)
A 		61
(0.8)
A 		81.9
(3)
P 		56
B 59.4
(2.3)
A 		9.7
(-3)
A 		11.5
(-2.8)
A 		65.5
(3)
A 		56
C 56.7
(-0.3)
A 		80.5
(2.8)
A 		36
(-3)
A 		82.3
(3)
P 		46
avr 47.3
(-1.4) 		46.5
(-1.5) 		36.2
(-3) 		76.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 73.3
(3)
M 		53.5
(0.8)
A 		50.2
(0.4)
A 		20
(-3)
A 		56.5
(1.1)
A 		69.5
(2.6)
P 		53
B 61.3
(1.5)
P 		53
(0.8)
A 		10.2
(-3)
A 		70.3
(2.3)
A 		78.4
(3)
P 		71
(2.3)
P 		68
C 49.3
(-1.1)
A 		93.7
(3)
M 		36.4
(-2.3)
A 		29.4
(-3)
A 		45.7
(-1.5)
A 		58.9
(-0.2)
P 		64
avr 61.3
(2.1) 		66.7
(3) 		32.3
(-3) 		39.9
(-1.7) 		60.2
(1.9) 		66.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 9.4
(-3)
A 		10.7
(-1.8)
A 		15.9
(3)
A 		12
(-0.6)
P 		7
B 19
(3)
A 		2.4
(-3)
A 		2.7
(-2.9)
A 		14
(1.2)
A 		17
C 18.8
(0.6)
A 		23.1
(3)
A 		12.5
(-3)
A 		13.9
(-2.2)
P 		11
avr 15.7
(3) 		12.1
(-1.1) 		10.4
(-3) 		13.3
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.5
(0.6)
M 		19
(3)
A 		10.9
(-0.5)
A 		5.1
(-3)
A 		17.1
(2.2)
A 		16.9
(2.1)
P 		14
B 21.3
(0.8)
P 		17.7
(0.1)
A 		2.5
(-3)
A 		18.6
(0.3)
A 		31.9
(3)
P 		26.5
(1.9)
P 		29
C 18.3
(0.3)
A 		28.6
(3)
M 		9.3
(-2.1)
A 		5.9
(-3)
A 		14.8
(-0.6)
A 		19.7
(0.6)
P 		23
avr 17.7
(1.3) 		21.8
(3) 		7.6
(-3) 		9.9
(-2) 		21.3
(2.8) 		21
(2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183059_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17911
Sequence Type Exemplar sequence
Representative Public ID C08A9.7 NCBI
Target Description C08A9.7 /REP_DB=WormBase Gene ID /WP=CE06789 /TR=Q17810 /GB=AAB53819.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078365 NCBI Caenorhabditis elegans C08A9.7 (C08A9.7) mRNA, complete cds. 11/11 None
SNAP00000037425 ENSEMBL cdna:SNAP chromosome:CEL140:X:17099287:17100652:-1 11/11 None
GENEFINDER00000037433 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17099287:17100652:-1 11/11 None
C08A9.7 ENSEMBL cdna:known chromosome:CEL140:X:17099024:17100664:-1 gene:C08A9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17099286-17100652(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-2
Ensembl C08A9.7
Entrez Gene 181750 Entrez gene
SwissProt Q17810 EMBL-EBI
WormBase CE06789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53819 Hypothetical protein C08A9.7 [Caenorhabditis elegans] ref|NP_510766.1| C08A9.7 [Caenorhabditis elegans] 1.0E-177
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-55
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183059_S_AT
tgaagccaagctccgggatgagccctggaccggtgaggatcaggcccaagaagacgatga
tattttattcgacggtctatttgaagttgaaaacaatttcgtgcacaacggattgccagc
tatggaggaaaaagtcagattctcagccaatctccatacagacgagcaagctaacatgtt
tgatacacaaactgagaatgtggataacatgatgggagcatacactgactcgttttccca
aattcgccacgagactagtaaatcaccgatgaatgcccagtcgatcaatgcttcaattga
atatgaaaatgttccagttcgccaaattgacaaaacagctgacaacattggagatcaggt
gaaacagttgtttgtggaccatccagatcgagcaaactttttccgggaagttctcttcaa
aactgtgctggaactacgtgatccagcgttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCAAGCTCCGGGATGAGCCC 543 573 477 Antisense
CTGGACCGGTGAGGATCAGGCCCAA 332 241 501 Antisense
GTGCACAACGGATTGCCAGCTATGG 20 481 577 Antisense
AGTCAGATTCTCAGCCAATCTCCAT 491 61 609 Antisense
CAGCCAATCTCCATACAGACGAGCA 430 203 620 Antisense
GGAGCATACACTGACTCGTTTTCCC 432 521 691 Antisense
TTTTCCCAAATTCGCCACGAGACTA 183 677 709 Antisense
AAATGTTCCAGTTCGCCAAATTGAC 518 119 783 Antisense
GAAACAGTTGTTTGTGGACCATCCA 79 357 837 Antisense
CAGATCGAGCAAACTTTTTCCGGGA 401 187 860 Antisense
GGAACTACGTGATCCAGCGTTCACA 448 529 906 Antisense
Sequence Source Affymetrix Proprietary Database