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[183058_at]

Description Y39B6A.A /REP_DB=WormBase Gene ID /WP=CE24229 /TR=Q9NEJ1 /GB=CAB61058.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 9.1
(-2.6)
A 		6.7
(-3)
A 		11.5
(-2.3)
A 		46.3
(3)
A 		40
B 6.1
(0.9)
A 		5
(-3)
A 		6.7
(3)
A 		6.4
(1.9)
A 		2
C 20.7
(-0.6)
A 		6.9
(-3)
A 		29.3
(0.8)
A 		42
(3)
A 		35
avr 12
(-1.6) 		6.2
(-3) 		15.8
(-0.7) 		31.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.7
(-1)
A 		2.8
(-3)
A 		20.6
(3)
A 		3.1
(-2.9)
A 		5.7
(-2)
A 		4.5
(-2.4)
A 		18
B 8.4
(-2.6)
A 		6.4
(-3)
A 		6.7
(-2.9)
A 		6.8
(-2.9)
A 		33.7
(3)
A 		20.7
(0.1)
A 		27
C 6.3
(2.6)
A 		5
(0.8)
A 		4.6
(0.2)
A 		2.3
(-3)
A 		6.6
(3)
A 		3.3
(-1.6)
A 		4
avr 7.8
(-1) 		4.7
(-2.7) 		10.6
(0.5) 		4.1
(-3) 		15.3
(3) 		9.5
(-0.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.3
(-0.9)
A 		1.4
(-3)
A 		3
(-1.2)
A 		6.8
(3)
A 		5
B 1.9
(3)
A 		1.2
(-3)
A 		1.5
(-0.4)
A 		1.4
(-1.3)
A 		1
C 6.9
(0.6)
A 		2
(-3)
A 		10.2
(3)
A 		7.1
(0.7)
A 		8
avr 4
(1.2) 		1.5
(-3) 		4.9
(2.7) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.6
(-1.7)
A 		1
(-2.7)
A 		4.5
(3)
A 		0.8
(-3)
A 		1.7
(-1.5)
A 		1.1
(-2.5)
A 		4
B 2.9
(-2.4)
A 		2.1
(-2.8)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		13.7
(3)
A 		7.7
(0)
A 		12
C 2.3
(3)
A 		1.5
(0.3)
A 		1.2
(-0.7)
A 		0.5
(-3)
A 		2.1
(2.3)
A 		1.1
(-1)
A 		2
avr 2.3
(-1.4) 		1.5
(-2.4) 		2.4
(-1.3) 		1
(-3) 		5.8
(3) 		3.3
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19453
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.A NCBI
Target Description Y39B6A.A /REP_DB=WormBase Gene ID /WP=CE24229 /TR=Q9NEJ1 /GB=CAB61058.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171561 NCBI Caenorhabditis elegans Y39B6A.46 (Y39B6A.46) mRNA, complete cds. 11/11 None
GENEFINDER00000030716 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18960786:18962745:-1 11/11 None
Y39B6A.46 ENSEMBL cdna:known chromosome:CEL140:V:18960813:18962745:-1 gene:Y39B6A.46 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030525 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18960785-18962745(-) 99.75 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.46
Entrez Gene 189730 Entrez gene
SwissProt Q8MYM0 EMBL-EBI
WormBase CE29881 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31836 Hypothetical protein Y39B6A.46 [Caenorhabditis elegans] ref|NP_741651.1| Y39B6A.46 [Caenorhabditis elegans] 1.0E-128
blast CAE56193 Hypothetical protein CBG23816 [Caenorhabditis briggsae] 1.0E-41
Sequence
Target Sequence 
>C. ELEGANS:183058_AT
ggaagatttcttggatccatccgccgctgattttctcggtcacctggagccgtctacgtc
atcgcaggatttcatctactatgatgacgtggcattagacactactacgtcatcgtcgtt
cgtcacgtcacaacctagagaattgtactgttttacgtgtggagatgcatttaacaatcg
gaaagggctttacagacacggaaaaaccgccgaacacgcgacacgacctcctcgccgaaa
aattgagcgaaaaattcaaattcccgccgaaccgccagaaaaaccaccggaaattccgaa
aaaatcgataaaaatctgcggggaaaaatcgatttgtgcggaatgttcggggagttttcc
taatcgaaaagcactttacagacatggaaaacaaacaaatcatcagacacattttcaacg
tgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATTTCTTGGATCCATCCGCC 527 531 204 Antisense
CGTCTACGTCATCGCAGGATTTCAT 117 245 254 Antisense
CATCGCAGGATTTCATCTACTATGA 552 211 263 Antisense
GATGACGTGGCATTAGACACTACTA 16 413 286 Antisense
TTAGACACTACTACGTCATCGTCGT 233 681 298 Antisense
GTTCGTCACGTCACAACCTAGAGAA 232 443 321 Antisense
GTACTGTTTTACGTGTGGAGATGCA 484 459 348 Antisense
TCGGAAAGGGCTTTACAGACACGGA 53 599 381 Antisense
GACCTCCTCGCCGAAAAATTGAGCG 545 381 428 Antisense
TGTGCGGAATGTTCGGGGAGTTTTC 121 553 538 Antisense
TCATCAGACACATTTTCAACGTGGA 84 621 603 Antisense
Sequence Source Affymetrix Proprietary Database