[Home] | [Total List]

[183057_at] 7TM chemoreceptor, srt family

Description C29G2.4 /REP_DB=WormBase Gene ID /WP=CE08465 /TR=O16885 /GB=AAB69893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 10      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3.1
(-3)
A 		4.8
(-1.4)
A 		3.3
(-2.8)
A 		9.6
(3)
A 		7
B 2.9
(0.6)
A 		3.5
(3)
A 		2.2
(-2.2)
A 		2
(-3)
A 		2
C 2.7
(-2.8)
A 		2.4
(-2.9)
A 		1.6
(-3)
A 		36.6
(3)
A 		35
avr 2.9
(-2.8) 		3.6
(-2.5) 		2.4
(-3) 		16.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.9
(-1.8)
A 		1.4
(-2.8)
A 		4.4
(3)
A 		1.7
(-2.2)
A 		1.9
(-1.8)
A 		1.3
(-3)
A 		3
B 3
(-1.6)
A 		2.1
(-2.4)
A 		4.2
(-0.5)
A 		8.1
(3)
A 		1.4
(-3)
A 		2.2
(-2.3)
A 		7
C 7
(-1.6)
A 		2.5
(-2.9)
A 		2.1
(-3)
A 		23.6
(3)
A 		2.9
(-2.8)
A 		4.3
(-2.4)
A 		22
avr 4
(-1.7) 		2
(-3) 		3.6
(-1.9) 		11.1
(3) 		2.1
(-2.9) 		2.6
(-2.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-0.6)
A 		1
(-1.8)
A 		0.9
(-3)
A 		1.4
(3)
A 		0
B 0.9
(3)
A 		0.9
(3)
A 		0.5
(-1.8)
A 		0.4
(-3)
A 		1
C 0.9
(-2.7)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		6.2
(3)
A 		6
avr 1
(-2.1) 		0.9
(-2.4) 		0.7
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-2.1)
A 		0.5
(-1.3)
A 		1
(3)
A 		0.4
(-2.1)
A 		0.6
(-0.4)
A 		0.3
(-3)
A 		1
B 1
(-1.4)
A 		0.7
(-2.6)
A 		1
(-1.4)
A 		2.1
(3)
A 		0.6
(-3)
A 		0.8
(-2.2)
A 		2
C 2.6
(0)
A 		0.8
(-2.6)
A 		0.5
(-3)
A 		4.7
(3)
A 		0.9
(-2.4)
A 		1.4
(-1.7)
A 		4
avr 1.3
(-0.9) 		0.7
(-3) 		0.8
(-2.6) 		2.4
(3) 		0.7
(-3) 		0.8
(-2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15176
Sequence Type Exemplar sequence
Representative Public ID C29G2.4 NCBI
Target Description C29G2.4 /REP_DB=WormBase Gene ID /WP=CE08465 /TR=O16885 /GB=AAB69893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071305 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-4) (srt-4) mRNA, complete cds. 11/11 None
GENEFINDER00000002211 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2574009:2579644:1 11/11 None
C29G2.4 ENSEMBL cdna:known chromosome:CEL140:V:2577731:2579644:1 gene:C29G2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002206 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2577450-2579644(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-4
Ensembl C29G2.4
Entrez Gene 183033 Entrez gene
SwissProt O16885 EMBL-EBI
WormBase CE37876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69893 Hypothetical protein C29G2.4 [Caenorhabditis elegans] ref|NP_503706.2| Serpentine Receptor, class T family member (srt-4) [Caenorhabditis elegans] 0.0
blast AAB69894 Hypothetical protein C29G2.5 [Caenorhabditis elegans] ref|NP_503705.1| Serpentine Receptor, class T family member (srt-58) [Caenorhabditis elegans] 0.0
blast NP_503841 Serpentine Receptor, class T family member (srt-5) [Caenorhabditis elegans] gb|AAG24001.2| Serpentine receptor, class t protein 5 [Caenorhabditis elegans] 1.0E-138
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.3E-59
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.7E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503706.2 7 39-61,74-96,111-133,154-176,208-230,243-261,271-293
C29G2.4 7 39-61,74-96,111-133,154-176,208-230,243-261,271-293
GENEFINDER00000002211 12 199-221,231-253,283-305,325-347,465-487,507-529,541-563,578-600,621-643,675-697,710-728,738-760
Sequence
Target Sequence 
>C. ELEGANS:183057_AT
ctttgctttttcgaggtcgcacatttaattatgtgatttttctactctttatttatggaa
tgtatgcgtttttattcacgcagccagtcattttttctacccaatatcatagttatctct
atgaccctatgattggaaataatccaaaaatttacttgaattatacaactgttgtgaaca
atacgttatcaacagttctgacaactgggatgtattttcatttgtgctattacttgattt
tcaaatttggatattctacatcaatgtggctatacaagtctaaacgacagataatcgcac
aaggtatcatactaacctttttccatgcctcaacttctatcatttacgagtacgttcagt
ttttcccggccccgtggtggctcatccttatcgctcatatttcctggcagtttagcagtg
gatgtttgggaattgtatatttgactttgaatcggacgatacggaactctgttgtcaaaa
tgatttttcccaagaaaatgcgattatattttggctggtacattggaaccgatgagcacg
tggctttggagcaggcgggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGCTTTTTCGAGGTCGCACATT 216 223 647 Antisense
GTGATTTTTCTACTCTTTATTTATG 404 485 679 Antisense
GTTTTTATTCACGCAGCCAGTCATT 458 449 714 Antisense
CCAGTCATTTTTTCTACCCAATATC 568 271 730 Antisense
GTTATCTCTATGACCCTATGATTGG 634 447 758 Antisense
ATCATACTAACCTTTTTCCATGCCT 346 27 952 Antisense
TCCATGCCTCAACTTCTATCATTTA 234 591 968 Antisense
TTATCGCTCATATTTCCTGGCAGTT 201 681 1034 Antisense
ATCGGACGATACGGAACTCTGTTGT 222 35 1097 Antisense
GAACCGATGAGCACGTGGCTTTGGA 173 347 1172 Antisense
CACGTGGCTTTGGAGCAGGCGGGGA 209 199 1183 Antisense
Sequence Source Affymetrix Proprietary Database