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[183056_at]

Description T17A3.9 /REP_DB=WormBase Gene ID /WP=CE19586 /TR=O76696 /GB=AAC26955.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 18      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 16.1
(-3)
A 		26
(-2.1)
A 		26
(-2.1)
A 		79.6
(3)
A 		64
B 34.9
(-0.9)
A 		45.8
(2.2)
A 		27.4
(-3)
A 		48.6
(3)
A 		21
C 27.9
(-2.3)
A 		55.6
(-1.2)
A 		10.2
(-3)
A 		162.1
(3)
P 		152
avr 26.3
(-2.6) 		42.5
(-1.3) 		21.2
(-3) 		96.8
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 49.6
(2.1)
A 		19.4
(-1.8)
A 		56.3
(3)
A 		29.7
(-0.4)
A 		10.8
(-2.9)
A 		10
(-3)
A 		46
B 20.8
(-0.7)
A 		38.2
(3)
A 		10.3
(-3)
A 		14.9
(-2)
A 		22.6
(-0.4)
A 		16.3
(-1.7)
A 		28
C 15.2
(-0.7)
A 		34.3
(3)
A 		10.5
(-1.7)
A 		3.7
(-3)
A 		10.6
(-1.6)
A 		25.1
(1.2)
A 		31
avr 28.5
(2.2) 		30.6
(3) 		25.7
(1.2) 		16.1
(-2.5) 		14.7
(-3) 		17.1
(-2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 5.9
(-2.7)
A 		5.6
(-3)
A 		6.8
(-1.8)
A 		11.7
(3)
A 		6
B 11.1
(2.8)
A 		11.3
(3)
A 		6.4
(-3)
A 		10.4
(1.9)
A 		5
C 9.2
(-1.6)
A 		16
(0.1)
A 		3.6
(-3)
A 		27.3
(3)
P 		24
avr 8.7
(-1.3) 		11
(-0) 		5.6
(-3) 		16.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.1
(1.1)
A 		6.9
(-0.3)
A 		12.3
(3)
A 		7.5
(0.1)
A 		3.3
(-2.5)
A 		2.4
(-3)
A 		10
B 7.2
(-0.2)
A 		12.7
(3)
A 		2.5
(-3)
A 		3.9
(-2.2)
A 		9.2
(0.9)
A 		6.1
(-0.9)
A 		10
C 5.6
(-0)
A 		10.5
(3)
A 		2.7
(-1.8)
A 		0.7
(-3)
A 		3.4
(-1.3)
A 		8.4
(1.7)
A 		10
avr 7.3
(0.3) 		10
(3) 		5.8
(-1.2) 		4
(-3) 		5.3
(-1.7) 		5.6
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8273
Sequence Type Exemplar sequence
Representative Public ID T17A3.9 NCBI
Target Description T17A3.9 /REP_DB=WormBase Gene ID /WP=CE19586 /TR=O76696 /GB=AAC26955.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064759
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T17A3.11 ENSEMBL cdna:pseudogene chromosome:CEL140:III:150480:151804:-1 gene:T17A3.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:150479-153417(-) 100.0 100.0
Public Domain and Genome References
Ensembl T17A3.11
Sequence
Target Sequence 
>C. ELEGANS:183056_AT
gacgatcattgttctgctctattactttttggaattgttgtcatatcgtcttatttttgt
ctatggtagtaagtcagttgcagaagttatctacgaggtaaatactgtacttctgggtgt
tgtctctccagtctgtgcagtcttatatattccgatactgatccacatcagaaagtttcg
acacctatcatcagctcaactgaattcgccccaaatttacatattctgtcagttttttct
tgttttggcgtttaaaattgtaagtatcattaataaatttagacaatatgttccaaaaac
atttttacagggttgtatcattcctatgttctttatggatgagtttaaacgtctcccgat
aatagaactcacggatcttttgtattgcgcatttacacctctaattatccaaacttctta
tttgatgtgcaatcggcggaacttcagaacaatcttgaaattgtgcacttgctgtctgaa
atcgcacttgactcagccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATCATTGTTCTGCTCTATTAC 69 379 870 Antisense
TACTGTACTTCTGGGTGTTGTCTCT 525 645 972 Antisense
TCTCTCCAGTCTGTGCAGTCTTATA 128 613 992 Antisense
GAAAGTTTCGACACCTATCATCAGC 172 361 1040 Antisense
CATCAGCTCAACTGAATTCGCCCCA 339 213 1058 Antisense
GGGTTGTATCATTCCTATGTTCTTT 57 497 1179 Antisense
CTCACGGATCTTTTGTATTGCGCAT 136 229 1237 Antisense
GCGCATTTACACCTCTAATTATCCA 465 287 1256 Antisense
GATGTGCAATCGGCGGAACTTCAGA 417 409 1293 Antisense
TTGTGCACTTGCTGTCTGAAATCGC 222 707 1330 Antisense
TGAAATCGCACTTGACTCAGCCATC 395 571 1346 Antisense
Sequence Source Affymetrix Proprietary Database