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[183055_at]

Description Y73F4A.3 /REP_DB=WormBase Gene ID /WP=CE20369 /TR=Q9XWC1 /GB=CAA21756.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 23      6grp_total > 41      4grp_total > 39      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4814
1 2 3 4 range
A 5281.1
(3)
P 		1737.8
(-1.8)
P 		805.8
(-3)
P 		2139.8
(-1.2)
P 		4475
B 5488
(3)
P 		1601
(-2.4)
P 		1132
(-3)
P 		2128.4
(-1.6)
P 		4356
C 5619.5
(3)
P 		1717.8
(-2)
P 		968.7
(-3)
P 		2152.6
(-1.5)
P 		4651
avr 5462.9
(3) 		1685.5
(-2) 		968.8
(-3) 		2140.3
(-1.4) 		4494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3055
1 2 3 4 5 6 range
A 2709.4
(1.2)
P 		2165
(0.1)
P 		3599.4
(3)
P 		2836.3
(1.4)
P 		1507.7
(-1.2)
P 		646.4
(-3)
P 		2953
B 2582.2
(0.7)
P 		2442.2
(0.4)
P 		3701.6
(3)
P 		2390.7
(0.3)
P 		1667.8
(-1.3)
P 		838.9
(-3)
P 		2863
C 1965.1
(-0.1)
P 		2461.8
(1.5)
P 		1942.8
(-0.1)
P 		2914.8
(3)
P 		1714.8
(-0.9)
P 		1054.7
(-3)
P 		1860
avr 2418.9
(1.2) 		2356.3
(1.1) 		3081.3
(3) 		2713.9
(2) 		1630.1
(-0.9) 		846.7
(-3) 		2235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1712
1 2 3 4 range
A 1922.8
(3)
P 		377.2
(-2.4)
P 		210.7
(-3)
P 		313.2
(-2.6)
P 		1712
B 1750.1
(3)
P 		395.4
(-2.5)
P 		262.3
(-3)
P 		453.6
(-2.2)
P 		1488
C 1860.2
(3)
P 		493.9
(-2.4)
P 		337.6
(-3)
P 		363
(-2.9)
P 		1523
avr 1844.4
(3) 		422.2
(-2.4) 		270.2
(-3) 		376.6
(-2.6) 		1574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 742
1 2 3 4 5 6 range
A 499.5
(0.3)
P 		770
(2.9)
P 		783.9
(3)
P 		719.4
(2.4)
P 		455
(-0.1)
P 		157.4
(-3)
P 		627
B 898.5
(3)
P 		812.9
(2.1)
P 		898.9
(3)
P 		633.2
(0.3)
P 		677.6
(0.7)
P 		312.8
(-3)
P 		586
C 728.4
(2.7)
P 		751.2
(3)
P 		494.5
(-0.9)
P 		586.2
(0.5)
P 		554.9
(0)
P 		353.1
(-3)
P 		398
avr 708.8
(2.2) 		778
(3) 		725.8
(2.4) 		646.3
(1.4) 		562.5
(0.4) 		274.4
(-3) 		504
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8469
Sequence Type Exemplar sequence
Representative Public ID Y73F4A.3 NCBI
Target Description Y73F4A.3 /REP_DB=WormBase Gene ID /WP=CE20369 /TR=Q9XWC1 /GB=CAA21756.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069171 NCBI Caenorhabditis elegans Y73F4A.3 (Y73F4A.3) mRNA, complete cds. 11/11 None
SNAP00000041256 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9039625:9040440:-1 11/11 None
GENEFINDER00000041259 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9039625:9040440:-1 11/11 None
Y73F4A.3 ENSEMBL cdna:known chromosome:CEL140:IV:9039412:9040473:-1 gene:Y73F4A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9039630-9040446(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F4A.3
Entrez Gene 177721 Entrez gene
SwissProt Q9XWC1 EMBL-EBI
WormBase CE20369 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21756 Hypothetical protein Y73F4A.3 [Caenorhabditis elegans] ref|NP_501572.1| Y73F4A.3 [Caenorhabditis elegans] 3.0E-84
blast CAE74092 Hypothetical protein CBG21752 [Caenorhabditis briggsae] 3.0E-76
blast CAE65422 Hypothetical protein CBG10380 [Caenorhabditis briggsae] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 4.3E-31
Sequence
Target Sequence 
>C. ELEGANS:183055_AT
aacgattattctactgctcatttcaattggaactgtggcttcacagacttgcaagttttc
aaaatccgcagtgaaggccaattggaaaattcaaaatggggcattgcaaattcaatatca
aaataatagaattaccaataatcaatggactgcaattggatttggacccggaatgtcaaa
cctgaacgtaatcgtattcatagtccaaaatagtcaagtgactgtacgtaccggaagaac
atctggatatggtccaccatcttttgataatcaaagcagtgttagtgttcaaatggcaaa
tcattctggatcaacactcaatgctcttgtcaatgtcccattaaactttaatggaatgaa
tattcaaaattgtcagacttggaattttgtacaaagcggtccaatcaacaacggaaatat
gggtgtacatacatcgagaccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGATTATTCTACTGCTCATTTCA 399 145 24 Antisense
GTGGCTTCACAGACTTGCAAGTTTT 446 491 58 Antisense
AAAATCCGCAGTGAAGGCCAATTGG 148 131 84 Antisense
CTGCAATTGGATTTGGACCCGGAAT 337 233 173 Antisense
GGACCCGGAATGTCAAACCTGAACG 396 521 187 Antisense
GTCAAGTGACTGTACGTACCGGAAG 452 455 236 Antisense
TATGGTCCACCATCTTTTGATAATC 233 655 271 Antisense
AAATCATTCTGGATCAACACTCAAT 454 117 321 Antisense
CTCAATGCTCTTGTCAATGTCCCAT 305 227 340 Antisense
TACAAAGCGGTCCAATCAACAACGG 311 637 413 Antisense
GGGTGTACATACATCGAGACCAGAT 529 497 444 Antisense
Sequence Source Affymetrix Proprietary Database