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[183054_s_at]

Description C18E9.3A /REP_DB=WormBase Gene ID /WP=CE05295 /TR=Q18094 /GB=CAA93854.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 83      6grp_total > 77      4grp_total > 01      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 480.7
(-1.4)
P 		404.9
(-3)
P 		528.9
(-0.4)
P 		687.3
(3)
P 		282
B 535.3
(-1.8)
P 		460
(-3)
P 		494.8
(-2.4)
P 		821.6
(3)
P 		362
C 490.5
(-1.6)
P 		375.6
(-3)
P 		456.6
(-2)
P 		874.9
(3)
P 		499
avr 502.2
(-1.6) 		413.5
(-3) 		493.4
(-1.7) 		794.6
(3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 477.5
(-1.1)
P 		553.2
(-0)
P 		348.6
(-3)
P 		482.6
(-1.1)
P 		503.9
(-0.7)
P 		761.1
(3)
P 		413
B 376.6
(-3)
P 		516.1
(0.1)
P 		546.7
(0.7)
P 		433
(-1.8)
P 		537.8
(0.5)
P 		650.1
(3)
P 		274
C 410.7
(-3)
P 		499.5
(-0.9)
P 		534.4
(-0.1)
P 		530.5
(-0.2)
P 		501.8
(-0.9)
P 		665.5
(3)
P 		255
avr 421.6
(-3) 		522.9
(-0.8) 		476.6
(-1.8) 		482
(-1.7) 		514.5
(-0.9) 		692.2
(3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 175
(3)
P 		87.9
(-3)
P 		138.3
(0.5)
P 		100.6
(-2.1)
P 		87
B 170.7
(2.6)
P 		113.6
(-3)
P 		114.7
(-2.9)
P 		175.1
(3)
P 		62
C 162.4
(3)
P 		108
(-3)
P 		159.1
(2.6)
P 		147.5
(1.4)
P 		54
avr 169.4
(3) 		103.2
(-3) 		137.4
(0.1) 		141.1
(0.4) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 88
(-2.4)
P 		196.8
(3)
P 		75.9
(-3)
P 		122.4
(-0.7)
P 		152
(0.8)
P 		185.3
(2.4)
P 		121
B 131
(-2.2)
P 		171.8
(-0.3)
P 		132.7
(-2.2)
P 		114.7
(-3)
P 		218.5
(1.9)
P 		242.4
(3)
P 		128
C 152.2
(-0.6)
P 		152.4
(-0.6)
P 		136
(-1.5)
P 		106.7
(-3)
P 		162.4
(-0.1)
P 		222.8
(3)
P 		116
avr 123.7
(-2.5) 		173.7
(0.5) 		114.9
(-3) 		114.6
(-3) 		177.6
(0.7) 		216.8
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183054_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2826
Sequence Type Exemplar sequence
Representative Public ID C18E9.3A NCBI
Target Description C18E9.3A /REP_DB=WormBase Gene ID /WP=CE05295 /TR=Q18094 /GB=CAA93854.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063508(11), NM_063509(11), NM_001026806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063508 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) (pqn-14) mRNA, complete cds. 11/11 None
NM_063509 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) (pqn-14) mRNA, complete cds. 11/11 None
NM_001026806 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) (pqn-14) mRNA, complete cds. 11/11 None
SNAP00000035642 ENSEMBL cdna:SNAP chromosome:CEL140:II:8967107:8969203:-1 11/11 None
GENEFINDER00000035653 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8967107:8969383:-1 11/11 None
C18E9.3a ENSEMBL cdna:known chromosome:CEL140:II:8966831:8969383:-1 gene:C18E9.3 11/11 A 
C18E9.3b ENSEMBL cdna:known chromosome:CEL140:II:8967107:8969383:-1 gene:C18E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8967103-8969380(-) 96.07 100.0
Public Domain and Genome References
Ensembl C18E9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93854 Hypothetical protein C18E9.3a [Caenorhabditis elegans] ref|NP_495909.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
blast CAA93860 Hypothetical protein C18E9.3b [Caenorhabditis elegans] ref|NP_495910.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
blast CAI79119 Hypothetical protein C18E9.3c [Caenorhabditis elegans] ref|NP_001021977.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495909.2 1 31-53
NP_495910.1 1 31-53
C18E9.3a 1 31-53
C18E9.3b 1 31-53
GENEFINDER00000035653 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:183054_S_AT
atggtgctggtcgtggacagaatcgacagccgatgatgtatcagatgccatgcaacagtg
ggccgacagcaaagcccccgccgttgatgaatcaaatgcagaatagatgtatgaccaaca
atggtcaaaactatcagaataggaatatgcagcagcaaggtcagcagcgatcatattcgt
cacagcctcagaatggtcagttctaccaaaacggaaattccaaccagaacaatccgaata
atggtagaaaacagcagcatcagccacagcagcagcagaacaaatcaggaaaattcggac
agaatagaaatgatatgcaaaagaacaattatcaaccaaatctacagcaacctccgatga
gtcaaaatccaattccatttggatgcccaccacgtaatgtgaatgcgattcgagaacaac
acgcaaacaatggatccccaaacactggcgctggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGCTGGTCGTGGACAGAATCG 378 51 1397 Antisense
AGATGCCATGCAACAGTGGGCCGAC 306 67 1439 Antisense
ACAGTGGGCCGACAGCAAAGCCCCC 40 3 1451 Antisense
GCCCCCGCCGTTGATGAATCAAATG 139 285 1470 Antisense
GCAGCAGCAAGGTCAGCAGCGATCA 45 313 1545 Antisense
GCAGCGATCATATTCGTCACAGCCT 652 311 1560 Antisense
GTCACAGCCTCAGAATGGTCAGTTC 64 465 1575 Antisense
AAATCTACAGCAACCTCCGATGAGT 600 117 1734 Antisense
ATTTGGATGCCCACCACGTAATGTG 503 13 1773 Antisense
AACACGCAAACAATGGATCCCCAAA 62 135 1814 Antisense
ATCCCCAAACACTGGCGCTGGAATT 244 37 1830 Antisense
Sequence Source Affymetrix Proprietary Database