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[183053_at]

Description C46F4.1 /REP_DB=WormBase Gene ID /WP=CE04219 /TR=Q18659 /GB=AAA80408.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 146
(-0)
A 		95.9
(-1.6)
A 		48.7
(-3)
A 		246.1
(3)
P 		197
B 173
(-0.2)
A 		113
(-2.3)
A 		92.1
(-3)
A 		265.1
(3)
P 		173
C 145
(-1.2)
A 		111.1
(-2)
A 		73.3
(-3)
A 		308.2
(3)
P 		235
avr 154.7
(-0.5) 		106.7
(-1.9) 		71.4
(-3) 		273.1
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 150.3
(3)
A 		126.4
(1.2)
A 		89
(-1.6)
A 		109.3
(-0.1)
A 		144.4
(2.6)
A 		71
(-3)
A 		79
B 140.8
(3)
A 		140.3
(3)
A 		110.3
(0.7)
A 		62.3
(-3)
A 		130.7
(2.2)
A 		130.8
(2.2)
A 		79
C 130.7
(1.8)
A 		149.8
(3)
A 		118.5
(1)
A 		53.9
(-3)
A 		78.7
(-1.4)
A 		91.3
(-0.7)
A 		96
avr 140.6
(3) 		138.8
(2.8) 		105.9
(-0.2) 		75.2
(-3) 		117.9
(0.9) 		97.7
(-0.9) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 53.1
(3)
A 		20.8
(-1.8)
A 		12.7
(-3)
A 		36
(0.5)
P 		40
B 55.2
(2.8)
A 		27.9
(-1.9)
A 		21.4
(-3)
A 		56.5
(3)
P 		35
C 48
(2.1)
A 		31.9
(-1.6)
A 		25.5
(-3)
A 		52
(3)
P 		27
avr 52.1
(3) 		26.9
(-1.7) 		19.9
(-3) 		48.2
(2.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 27.7
(-0.7)
A 		44.9
(3)
A 		19.4
(-2.5)
A 		27.7
(-0.7)
A 		43.6
(2.7)
A 		17.3
(-3)
A 		28
B 49
(2.3)
A 		46.7
(2)
A 		26.8
(-1.3)
A 		16.5
(-3)
A 		53.1
(3)
A 		48.8
(2.3)
A 		37
C 48.4
(3)
A 		45.7
(2.6)
A 		30.2
(0.1)
A 		10.8
(-3)
A 		25.5
(-0.7)
A 		30.6
(0.2)
A 		38
avr 41.7
(2.1) 		45.8
(3) 		25.5
(-1.4) 		18.3
(-3) 		40.7
(1.9) 		32.2
(0) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16154
Sequence Type Exemplar sequence
Representative Public ID C46F4.1 NCBI
Target Description C46F4.1 /REP_DB=WormBase Gene ID /WP=CE04219 /TR=Q18659 /GB=AAA80408.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076591 NCBI Caenorhabditis elegans C46F4.1 (C46F4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031298 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5931119:5934325:1 11/11 None
SNAP00000031294 ENSEMBL cdna:SNAP chromosome:CEL140:X:5932726:5934325:1 11/11 None
C46F4.1 ENSEMBL cdna:known chromosome:CEL140:X:5932726:5934325:1 gene:C46F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5932725-5934325(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46F4.1
Entrez Gene 183513 Entrez gene
SwissProt Q18659 EMBL-EBI
WormBase CE04219 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626914_AT Dromyosuppressin receptor 1 dm
DROSOPHILA_2:1624469_AT Dromyosuppressin receptor 1 dm
DROSGENOME1:148038_AT Dromyosuppressin receptor 1 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508992 C46F4.1 [Caenorhabditis elegans] gb|AAA80408.1| Hypothetical protein C46F4.1 [Caenorhabditis elegans] 1.0E-162
blast CAE68822 Hypothetical protein CBG14781 [Caenorhabditis briggsae] 1.0E-149
blast NP_508992 C46F4.1 [Caenorhabditis elegans] gb|AAA80408.1| Hypothetical protein C46F4.1 [Caenorhabditis elegans] 1.0E-145
blast CAE68822 Hypothetical protein CBG14781 [Caenorhabditis briggsae] 1.0E-139
blast XP_394764 PREDICTED: similar to putative myosuppressin receptor; AMSR, partial [Apis mellifera] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508992.1 7 35-57,69-91,113-135,156-178,217-239,284-306,326-348
C46F4.1 7 35-57,69-91,113-135,156-178,217-239,284-306,326-348
GENEFINDER00000031298 7 24-46,58-80,102-124,145-167,206-228,273-295,315-337
SNAP00000031294 7 35-57,69-91,113-135,156-178,217-239,284-306,326-348
Sequence
Target Sequence 
>C. ELEGANS:183053_AT
tcaagagagtccacttctcgtgtccgcagttttctgggcatttggtattgtgttcaaact
acttccgtcgttaattctctcaatactactcattgctcttataagatctttgaaaagcgt
agaacgaaggcgtaaaaactggaagcgtacacaaggtgccaacatttgcaccaactccga
gagaaaagcaaaaagaaagttgacgaccagaccgcgcacaacacgaatgctcgtcatcat
tctactcctatgtgtaatggtagaactacccatgggtattcttaacttgtgcgtggctat
ctacggtgaagagttcggaaatcggtattacgatccagtgggaaatctgatggaaatgct
gacgctgttgtacagctctgttagcttcgttctctattgcaccatgtccaatgagtatct
ctccacgttccgagcactattcttcccatggaccagaaagaatagtttaagaggaactcg
aagaagttggaatcatcgacatgacgacgaaacaaagtccccacgaacttttctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGAGAGTCCACTTCTCGTGTCC 343 631 627 Antisense
TGTCCGCAGTTTTCTGGGCATTTGG 633 555 647 Antisense
CTACTTCCGTCGTTAATTCTCTCAA 565 223 685 Antisense
AACATTTGCACCAACTCCGAGAGAA 205 137 787 Antisense
AAGAAAGTTGACGACCAGACCGCGC 406 151 819 Antisense
GCGCACAACACGAATGCTCGTCATC 552 287 840 Antisense
CGTCATCATTCTACTCCTATGTGTA 355 245 858 Antisense
GGGTATTCTTAACTTGTGCGTGGCT 366 497 900 Antisense
GTACAGCTCTGTTAGCTTCGTTCTC 52 461 996 Antisense
GTCCAATGAGTATCTCTCCACGTTC 557 475 1032 Antisense
CAAAGTCCCCACGAACTTTTCTGAT 41 193 1139 Antisense
Sequence Source Affymetrix Proprietary Database