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[183051_at]

Description F48G7.7 /REP_DB=WormBase Gene ID /WP=CE10766 /TR=O44586 /GB=AAG24123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 17      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 5.8
(-3)
A 		84.1
(0.6)
P 		43.2
(-1.3)
A 		137.1
(3)
P 		131
B 25.4
(-2.2)
A 		10.3
(-3)
A 		58.6
(-0.6)
A 		130.9
(3)
P 		121
C 7.5
(-3)
A 		47.3
(0.2)
A 		25.8
(-1.5)
A 		81.4
(3)
P 		74
avr 12.9
(-3) 		47.2
(-1) 		42.5
(-1.3) 		116.5
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 1.7
(-3)
A 		12.1
(-2.9)
A 		38.1
(-2.7)
A 		210.9
(-1)
P 		641
(3)
P 		362.3
(0.4)
P 		639
B 3.8
(-3)
A 		30.9
(-2.8)
A 		41
(-2.7)
A 		203.9
(-1.3)
P 		725.8
(3)
P 		426.7
(0.5)
P 		722
C 17.9
(-2.9)
A 		6.2
(-3)
A 		19.3
(-2.9)
A 		242.9
(-0.9)
P 		686.2
(3)
P 		494.7
(1.3)
P 		680
avr 7.8
(-3) 		16.4
(-2.9) 		32.8
(-2.8) 		219.2
(-1.1) 		684.3
(3) 		427.9
(0.7) 		677
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.1
(-3)
A 		18.3
(2.4)
P 		11.3
(0.1)
A 		20.1
(3)
P 		18
B 8.1
(-1.7)
A 		2.5
(-3)
A 		13.6
(-0.4)
A 		27.9
(3)
P 		25
C 2.5
(-3)
A 		13.6
(2.9)
A 		9
(0.5)
A 		13.7
(3)
P 		11
avr 4.2
(-3) 		11.5
(-0.3) 		11.3
(-0.4) 		20.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 0.3
(-3)
A 		4.3
(-2.9)
A 		8.3
(-2.8)
A 		53.5
(-1.3)
P 		193.4
(3)
P 		88.2
(-0.3)
P 		193
B 1.3
(-3)
A 		10.3
(-2.8)
A 		9.9
(-2.8)
A 		54
(-1.9)
P 		294.9
(3)
P 		159.1
(0.2)
P 		294
C 6.6
(-2.9)
A 		1.9
(-3)
A 		4.9
(-2.9)
A 		48.8
(-1.7)
P 		222
(3)
P 		165.6
(1.5)
P 		220
avr 2.7
(-3) 		5.5
(-2.9) 		7.7
(-2.9) 		52.1
(-1.7) 		236.8
(3) 		137.6
(0.5) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15162
Sequence Type Exemplar sequence
Representative Public ID F48G7.7 NCBI
Target Description F48G7.7 /REP_DB=WormBase Gene ID /WP=CE10766 /TR=O44586 /GB=AAG24123.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070868 NCBI Caenorhabditis elegans F48G7.7 (F48G7.7) mRNA, complete cds. 11/11 None
SNAP00000037292 ENSEMBL cdna:SNAP chromosome:CEL140:V:625581:626219:-1 11/11 None
GENEFINDER00000037306 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:625581:626219:-1 11/11 None
F48G7.7 ENSEMBL cdna:known chromosome:CEL140:V:625581:626219:-1 gene:F48G7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:625580-626219(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.7
Entrez Gene 185995 Entrez gene
SwissProt O44586 EMBL-EBI
WormBase CE10766 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24123 Hypothetical protein F48G7.7 [Caenorhabditis elegans] ref|NP_503269.1| F48G7.7 [Caenorhabditis elegans] 2.0E-91
blast AAG24123 Hypothetical protein F48G7.7 [Caenorhabditis elegans] ref|NP_503269.1| F48G7.7 [Caenorhabditis elegans] 8.0E-86
blast AAG24124 Hypothetical protein F48G7.8 [Caenorhabditis elegans] ref|NP_503270.1| F48G7.8 [Caenorhabditis elegans] 9.0E-75
blast AAG24121 Hypothetical protein F48G7.5 [Caenorhabditis elegans] ref|NP_503267.1| F48G7.5 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.6E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.6E-14
Sequence
Target Sequence 
>C. ELEGANS:183051_AT
cttttcacttttaccattctctgggcaggtgcggaaaaccagttatggtgcaaaagtggc
ccatttccaacaggaggaaaaccctgcccaccaaacttcacagaactacccaacgggctt
tgttgttctgatgatgacgtctatatcatatcgggcaatggcaccacactttccccatca
acatccactacctctgatccatgccatgacaaaataaacaatgcgacaggagttagcgat
tgtgcaatgcgacgaaatttgtgtacggatccaaattacagaaagatgatgcatgatcaa
tgcccaaaaacttgcggattctgcacaactaggtcgactacgaaggcgccagcgtgttct
gataaagtggacccgagaactggggttagtgattgcccacaaaagaagtatctatgcaca
gatccaacttacgaggcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCACTTTTACCATTCTCTGGG 138 223 28 Antisense
TACCATTCTCTGGGCAGGTGCGGAA 483 649 39 Antisense
AAGTGGCCCATTTCCAACAGGAGGA 643 157 81 Antisense
CTGCCCACCAAACTTCACAGAACTA 159 237 111 Antisense
CACAGAACTACCCAACGGGCTTTGT 297 193 126 Antisense
ACGGGCTTTGTTGTTCTGATGATGA 373 95 140 Antisense
TACCTCTGATCCATGCCATGACAAA 590 649 216 Antisense
GCGACGAAATTTGTGTACGGATCCA 5 245 276 Antisense
GGATTCTGCACAACTAGGTCGACTA 234 509 343 Antisense
CTAGGTCGACTACGAAGGCGCCAGC 434 225 356 Antisense
GCACAGATCCAACTTACGAGGCACT 266 315 443 Antisense
Sequence Source Affymetrix Proprietary Database