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[183049_at]

Description B0432.7 /REP_DB=WormBase Gene ID /WP=CE07745 /TR=P90988 /GB=AAB37892.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 34.6
(-3)
A 		41
(-1.8)
A 		63.8
(2.4)
P 		67
(3)
P 		32
B 14.5
(-3)
A 		36.9
(0.3)
A 		31.2
(-0.6)
A 		55.5
(3)
A 		41
C 52.1
(0)
A 		78.9
(3)
A 		46.6
(-0.6)
A 		24.6
(-3)
A 		54
avr 33.7
(-3) 		52.3
(3) 		47.2
(1.4) 		49
(1.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 37.1
(0.2)
A 		18.4
(-2.3)
A 		58.5
(3)
A 		50.3
(1.9)
P 		13.1
(-3)
A 		48
(1.6)
P 		45
B 24.2
(-1.5)
A 		31.8
(-0.9)
A 		77.3
(3)
A 		7.2
(-3)
A 		19.3
(-2)
A 		23.9
(-1.6)
A 		70
C 41.1
(0.5)
A 		60.1
(3)
P 		13.6
(-3)
A 		16.8
(-2.6)
A 		42.2
(0.7)
A 		22.9
(-1.8)
A 		47
avr 34.1
(-0.8) 		36.8
(-0.1) 		49.8
(3) 		24.8
(-3) 		24.9
(-3) 		31.6
(-1.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.6
(-0.2)
A 		8.9
(-3)
A 		16.7
(3)
P 		9.8
(-2.3)
P 		8
B 4.6
(-3)
A 		9.1
(0.8)
A 		7.2
(-0.8)
A 		11.8
(3)
A 		7
C 17.2
(1.2)
A 		22.7
(3)
A 		16.2
(0.9)
A 		4.1
(-3)
A 		19
avr 11.5
(0.5) 		13.6
(3) 		13.4
(2.8) 		8.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.8
(-1.1)
A 		6.5
(-1.3)
A 		12.7
(3)
A 		12.7
(3)
P 		4
(-3)
A 		11.7
(2.3)
P 		9
B 8.4
(-0.7)
A 		10.6
(0.1)
A 		18.8
(3)
A 		1.9
(-3)
A 		7.9
(-0.9)
A 		8.9
(-0.5)
A 		17
C 15.2
(1.8)
A 		18.3
(3)
P 		3.4
(-3)
A 		3.4
(-3)
A 		13.7
(1.1)
A 		7.7
(-1.3)
A 		15
avr 10.1
(1.2) 		11.8
(3) 		11.6
(2.8) 		6
(-3) 		8.5
(-0.4) 		9.4
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5208
Sequence Type Exemplar sequence
Representative Public ID B0432.7 NCBI
Target Description B0432.7 /REP_DB=WormBase Gene ID /WP=CE07745 /TR=P90988 /GB=AAB37892.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061289 NCBI Caenorhabditis elegans B0432.7 (B0432.7) mRNA, complete cds. 11/11 None
SNAP00000033637 ENSEMBL cdna:SNAP chromosome:CEL140:II:266446:273892:-1 10/11 None
GENEFINDER00000033654 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:266127:273892:-1 11/11 None
B0432.7 ENSEMBL cdna:known chromosome:CEL140:II:269389:275042:-1 gene:B0432.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:269388-273609(-) 91.67 91.67
Public Domain and Genome References
Gene Title
Ensembl B0432.7
Entrez Gene 181989 Entrez gene
SwissProt P90988 EMBL-EBI
WormBase CE07745 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37892 Hypothetical protein B0432.7 [Caenorhabditis elegans] ref|NP_493690.1| B0432.7 [Caenorhabditis elegans] 0.0
blast CAE62844 Hypothetical protein CBG07023 [Caenorhabditis briggsae] 0.0
blast AAB37892 Hypothetical protein B0432.7 [Caenorhabditis elegans] ref|NP_493690.1| B0432.7 [Caenorhabditis elegans] 1.0E-154
blast AAB37891 Hypothetical protein B0432.6 [Caenorhabditis elegans] ref|NP_493689.2| B0432.6 [Caenorhabditis elegans] 1.0E-152
blast AAB37892 Hypothetical protein B0432.7 [Caenorhabditis elegans] ref|NP_493690.1| B0432.7 [Caenorhabditis elegans] 1.0E-145
blast CAE62844 Hypothetical protein CBG07023 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033654 2 944-966,979-1001
Sequence
Target Sequence 
>C. ELEGANS:183049_AT
atgcctgatatcgggattccacgtggacaattgattggaataatcgctgataatttgagt
gataacttggagagtttatcagaattcacggattcttctatattttccgaaaaagttcaa
aaaattcaactttgtcttcgcctggccgaagttttatcccatgatgaacagtgtcgtcat
catcttcttactgtatgccccgcgcagctttgccaacaaatcgctacgtggcaatttacg
aagaatccggttgtggggcatcttacgagagctccgaaggatagagctgagccacttgag
ccacaatggacgatttatggaattgggattattttggagctttgcaggcttttagcggtg
ttgaaggatcactcaaaagtgcacaaagatcaatattggcaactgctgaaagatgaacga
attattccatttttggcatacggtatctcatatggagatcaggaaactgtacaacaggca
ttcctaacatattcacattgtgcacaagttccagcttttcctagtcatttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTGATATCGGGATTCCACGTG 619 41 832 Antisense
AAAATTCAACTTTGTCTTCGCCTGG 449 131 952 Antisense
GCCTGGCCGAAGTTTTATCCCATGA 696 281 971 Antisense
GAACAGTGTCGTCATCATCTTCTTA 629 351 997 Antisense
TCATCATCTTCTTACTGTATGCCCC 129 621 1008 Antisense
GCGCAGCTTTGCCAACAAATCGCTA 219 289 1033 Antisense
TCCGGTTGTGGGGCATCTTACGAGA 453 587 1077 Antisense
TAGAGCTGAGCCACTTGAGCCACAA 369 653 1113 Antisense
GGAGCTTTGCAGGCTTTTAGCGGTG 194 521 1167 Antisense
CAGGCATTCCTAACATATTCACATT 405 209 1306 Antisense
TTCCAGCTTTTCCTAGTCATTTGTG 670 699 1340 Antisense
Sequence Source Affymetrix Proprietary Database