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[183048_at]

Description T17A3.2 /REP_DB=WormBase Gene ID /WP=CE19580 /TR=O76690 /GB=AAC26949.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 345.2
(3)
P 		210.7
(-0.8)
A 		133.9
(-3)
A 		256.3
(0.5)
P 		211
B 401.2
(3)
P 		238.2
(-1)
A 		156.9
(-3)
A 		293.9
(0.4)
P 		244
C 328
(3)
P 		227.2
(-0.8)
A 		169.8
(-3)
P 		298.3
(1.9)
P 		158
avr 358.1
(3) 		225.4
(-0.9) 		153.5
(-3) 		282.8
(0.8) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 322.5
(3)
P 		251.6
(0.8)
P 		252.3
(0.8)
P 		223.7
(-0.1)
P 		164.8
(-1.9)
A 		130.3
(-3)
A 		192
B 292.7
(3)
P 		281.1
(2.6)
P 		250.9
(1.4)
P 		176.1
(-1.4)
P 		135.3
(-3)
A 		141.6
(-2.8)
P 		157
C 260.8
(1.6)
P 		290.7
(3)
P 		284.7
(2.7)
P 		232.3
(0.3)
P 		158.8
(-3)
A 		158.8
(-3)
P 		132
avr 292
(3) 		274.5
(2.3) 		262.6
(1.8) 		210.7
(-0.3) 		153
(-2.6) 		143.6
(-3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 125.7
(3)
P 		45.7
(-2.3)
A 		35
(-3)
A 		37.5
(-2.8)
P 		91
B 127.9
(3)
P 		58.8
(-1.5)
A 		36.3
(-3)
A 		62.6
(-1.3)
P 		92
C 108.6
(3)
P 		65.3
(-1.5)
A 		59.2
(-2.1)
P 		50.3
(-3)
P 		58
avr 120.7
(3) 		56.6
(-2) 		43.5
(-3) 		50.1
(-2.5) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 59.5
(-0.1)
P 		89.5
(3)
P 		55
(-0.6)
P 		56.7
(-0.4)
P 		49.7
(-1.1)
A 		31.7
(-3)
A 		58
B 101.9
(3)
P 		93.6
(2.1)
P 		60.9
(-1.4)
P 		46.6
(-3)
P 		55
(-2.1)
A 		52.8
(-2.3)
P 		55
C 96.7
(3)
P 		88.7
(2)
P 		72.5
(0.1)
P 		46.7
(-3)
P 		51.4
(-2.4)
A 		53.2
(-2.2)
P 		50
avr 86
(2.4) 		90.6
(3) 		62.8
(-0.7) 		50
(-2.4) 		52
(-2.2) 		45.9
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8251
Sequence Type Exemplar sequence
Representative Public ID T17A3.2 NCBI
Target Description T17A3.2 /REP_DB=WormBase Gene ID /WP=CE19580 /TR=O76690 /GB=AAC26949.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064752 NCBI Caenorhabditis elegans T17A3.2 (T17A3.2) mRNA, complete cds. 11/11 None
SNAP00000008185 ENSEMBL cdna:SNAP chromosome:CEL140:III:135833:137824:1 11/11 None
GENEFINDER00000008200 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:135833:137824:1 11/11 None
T17A3.2 ENSEMBL cdna:known chromosome:CEL140:III:134493:137964:1 gene:T17A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:135289-137824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.2
Entrez Gene 188564 Entrez gene
WormBase CE37151 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497153 T17A3.2 [Caenorhabditis elegans] 1.0E-171
blast T33426 hypothetical protein T17A3.2 - Caenorhabditis elegans 1.0E-159
blast T33426 hypothetical protein T17A3.2 - Caenorhabditis elegans 1.0E-156
blast AAZ94737 Hypothetical protein T17A3.2 [Caenorhabditis elegans] 1.0E-156
blast NP_497153 T17A3.2 [Caenorhabditis elegans] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:183048_AT
gagtttgcggagttgctggttcagcaaatactcgaacaactgaggaattttgattccgta
gaagtgaaacaggcaactaaagcggaatcacttgaaactgctcggcaaacgttcagaaaa
atcaaaagtcttacatcgccggtatttagcattgaaaaagtattgcggaagattgaaact
ctttgcttacctcctgacggagatgctccaagcattggagttcgtgagctggatgtggaa
tttaattccattaaatcttttactgaagaatttgagacaagtgcaagcgattttgatact
tatttgagtagcacatcgcatttggctttggagatatttgagtatagttcgactctccta
caagaactaggagacatggtgaacaatcgggagctaacatcggtgtgcactcatcttcca
atcgccattgatcaaaagaacaaggataaaataacgttttatggacaacaggtggccgag
ttgtgcaataaaatgactgacaatagaaagaaaattgaacgtagtcttcgtcaactccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGCGGAGTTGCTGGTTCAGC 220 399 310 Antisense
GCGGAATCACTTGAAACTGCTCGGC 657 293 391 Antisense
GAAACTGCTCGGCAAACGTTCAGAA 590 357 403 Antisense
AAGTCTTACATCGCCGGTATTTAGC 143 155 435 Antisense
AGATTGAAACTCTTTGCTTACCTCC 335 65 479 Antisense
GCTTACCTCCTGACGGAGATGCTCC 271 305 494 Antisense
GTAGCACATCGCATTTGGCTTTGGA 461 457 617 Antisense
GAGTATAGTTCGACTCTCCTACAAG 223 399 649 Antisense
TAACATCGGTGTGCACTCATCTTCC 616 639 704 Antisense
CTCATCTTCCAATCGCCATTGATCA 538 229 719 Antisense
TGAACGTAGTCTTCGTCAACTCCAA 684 565 825 Antisense
Sequence Source Affymetrix Proprietary Database