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[183047_at] 7TM chemoreceptor, srab family

Description C04F5.5 /REP_DB=WormBase Gene ID /WP=CE19669 /TR=Q9GZD3 /GB=AAF98596.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4
(-3)
A 		4.4
(-2.2)
A 		4.5
(-2)
A 		7
(3)
A 		3
B 4.9
(-3)
A 		8.5
(-1.9)
A 		5.8
(-2.7)
A 		25.3
(3)
A 		20
C 4.5
(-3)
A 		20.8
(-0.4)
A 		12.8
(-1.7)
A 		42.7
(3)
A 		38
avr 4.5
(-3) 		11.2
(-1) 		7.7
(-2.1) 		25
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.9
(0)
A 		14.5
(3)
A 		7.1
(-0.4)
A 		1.3
(-3)
A 		3.8
(-1.9)
A 		1.7
(-2.8)
A 		13
B 4
(1.9)
A 		2.6
(-3)
A 		3.5
(0.2)
A 		3.1
(-1.2)
A 		3.4
(-0.2)
A 		4.3
(3)
A 		2
C 5.6
(-2.2)
A 		4.9
(-2.3)
A 		2.5
(-2.8)
A 		30.4
(3)
A 		1.7
(-3)
A 		2.1
(-2.9)
A 		29
avr 5.8
(-0.9) 		7.3
(0.1) 		4.4
(-1.9) 		11.6
(3) 		3
(-2.8) 		2.7
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(3)
A 		1
(-3)
A 		1.2
(-0.6)
A 		1
(-3)
A 		1
B 1.6
(-2.6)
A 		2.1
(-1.8)
A 		1.3
(-3)
A 		5.4
(3)
A 		4
C 1.5
(-3)
A 		6
(1.7)
A 		4.5
(0.2)
A 		7.2
(3)
A 		6
avr 1.5
(-3) 		3
(0) 		2.3
(-1.4) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-1.6)
A 		5.1
(3)
A 		1.5
(-1.5)
A 		0.3
(-3)
A 		1.1
(-2)
A 		0.4
(-2.9)
A 		5
B 1.4
(1.5)
A 		0.9
(-2.3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.4
(1.5)
A 		1.6
(3)
A 		1
C 2.1
(-1.4)
A 		1.5
(-2)
A 		0.6
(-3)
A 		6.1
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		6
avr 1.6
(-0.4) 		2.5
(3) 		1
(-2.6) 		2.4
(2.6) 		1
(-2.6) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15198
Sequence Type Exemplar sequence
Representative Public ID C04F5.5 NCBI
Target Description C04F5.5 /REP_DB=WormBase Gene ID /WP=CE19669 /TR=Q9GZD3 /GB=AAF98596.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071966 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-2) (srab-2) mRNA, complete cds. 11/11 None
GENEFINDER00000034414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5097177:5110579:-1 11/11 None
C04F5.5 ENSEMBL cdna:known chromosome:CEL140:V:5102855:5104847:-1 gene:C04F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034404 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5102854-5104847(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-2
Ensembl C04F5.5
Entrez Gene 182221 Entrez gene
SwissProt Q7KNQ6 EMBL-EBI
WormBase CE19669 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR85910 Serpentine receptor, class ab (class a-like) protein 2 [Caenorhabditis elegans] ref|NP_504367.1| Serpentine Receptor, class AB (class A-like) family member (srab-2) [Caenorhabditis elegans] pir||T33768 hypothetical protein C04F5.5 - Caenorhabditis elegans 0.0
blast AAF98598 Udp-glucuronosyltransferase protein 63 [Caenorhabditis elegans] ref|NP_504369.1| C04F5.7 [Caenorhabditis elegans] 0.0
blast CAE64076 Hypothetical protein CBG08680 [Caenorhabditis briggsae] 0.0
blast AAF98595 Serpentine receptor, class ab (class a-like) protein 1 [Caenorhabditis elegans] ref|NP_504366.1| Serpentine Receptor, class AB (class A-like) family member (srab-1) [Caenorhabditis elegans] 0.0
blast AAF98595 Serpentine receptor, class ab (class a-like) protein 1 [Caenorhabditis elegans] ref|NP_504366.1| Serpentine Receptor, class AB (class A-like) family member (srab-1) [Caenorhabditis elegans] 1.0E-122
blast CAE64073 Hypothetical protein CBG08675 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504367.1 7 23-45,58-77,109-128,141-163,185-207,242-264,274-296
C04F5.5 7 23-45,58-77,109-128,141-163,185-207,242-264,274-296
GENEFINDER00000034414 20 561-583,596-615,645-667,680-699,724-746,781-803,813-835,937-959,969-988,1053-1075,1097-1119,1154-1176,1186-1208,1274-1296,1311-1330,1395-1414,1439-1461,1496-1518,1528-1547,1616-1638
Sequence
Target Sequence 
>C. ELEGANS:183047_AT
atgtttgcctatctatgtttcttttttcccttcattcatctggcaaagctggcaaagcta
ttatttattactgctgggtttcctcaactgacaatcaatcaatgcgaaccattccaattt
taatagttgttgtcagtcaactgatcacgattcctggtctcttatatcttctcagaaaaa
atgagcgatttcgagcactgtcctttcaaaaacgttcaacattatcacaaagatatcagc
tatcagaaaacctgcagactttgaccaagttccggattgtcagtgctgtaacatggactt
tcgttacttacaatgctgctgctacgtttggtgtttatctattctctgatgcgtggtcat
atgcagaagagtttgcggttattgaaatagttcactgccttccgctgtactacttgattc
tggcggcttgtctcatcattgaagacaaaaaacatcgaaatcagaacataatcaaagtta
acaactacgaaccacaatacttcaatcatttgcaagcattcttcgacgaggcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTGCCTATCTATGTTTCTTTT 692 47 461 Antisense
TTTTCCCTTCATTCATCTGGCAAAG 299 677 484 Antisense
TTATTACTGCTGGGTTTCCTCAACT 404 679 525 Antisense
TCAACTGATCACGATTCCTGGTCTC 404 631 597 Antisense
TCCTGGTCTCTTATATCTTCTCAGA 119 595 612 Antisense
ATGAGCGATTTCGAGCACTGTCCTT 664 45 641 Antisense
GAGCACTGTCCTTTCAAAAACGTTC 546 379 653 Antisense
GGACTTTCGTTACTTACAATGCTGC 340 523 755 Antisense
ACAATGCTGCTGCTACGTTTGGTGT 650 111 770 Antisense
ACGTTTGGTGTTTATCTATTCTCTG 303 95 784 Antisense
GCAAGCATTCTTCGACGAGGCGTTT 331 321 972 Antisense
Sequence Source Affymetrix Proprietary Database