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[183046_at]

Description F45E1.2 /REP_DB=WormBase Gene ID /WP=CE01939 /TR=Q09985 /GB=AAB04899.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 44
(-1.4)
A 		88.6
(0.5)
A 		5.3
(-3)
A 		146.9
(3)
A 		142
B 74.1
(3)
A 		59.2
(-3)
A 		63.9
(-1.1)
A 		70.9
(1.7)
A 		15
C 42.2
(-3)
A 		61.9
(1.5)
A 		49.9
(-1.2)
A 		68.4
(3)
A 		26
avr 53.4
(-1.5) 		69.9
(0.3) 		39.7
(-3) 		95.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 74.4
(3)
A 		51.7
(1)
A 		69.7
(2.6)
A 		6.9
(-2.9)
A 		39.7
(-0)
A 		5.6
(-3)
A 		69
B 54.5
(1.3)
A 		73.9
(3)
A 		64.2
(2.2)
A 		30.6
(-0.7)
A 		39.4
(0.1)
A 		3.6
(-3)
A 		70
C 30.5
(-1.1)
A 		59.2
(2.3)
A 		64.9
(3)
A 		41.6
(0.2)
A 		26.9
(-1.5)
A 		14.5
(-3)
A 		50
avr 53.1
(1.6) 		61.6
(2.5) 		66.3
(3) 		26.4
(-1.1) 		35.3
(-0.2) 		7.9
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16
(1.4)
A 		19.2
(2.3)
A 		1.4
(-3)
A 		21.5
(3)
A 		20
B 23.6
(3)
A 		14.6
(-3)
A 		14.8
(-2.9)
A 		15.1
(-2.7)
A 		9
C 14
(-0.6)
A 		17.8
(3)
A 		17.4
(2.6)
A 		11.5
(-3)
A 		6
avr 17.9
(3) 		17.2
(2.4) 		11.2
(-3) 		16
(1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.7
(1.3)
A 		18.4
(3)
A 		15.2
(1.9)
A 		1.7
(-2.9)
A 		12
(0.7)
A 		1.4
(-3)
A 		17
B 19
(1.6)
A 		24.6
(3)
A 		15.6
(0.7)
A 		8.1
(-1.2)
A 		16
(0.8)
A 		1.3
(-3)
A 		23
C 11.3
(-0.1)
A 		18.1
(3)
A 		16.5
(2.3)
A 		8.4
(-1.4)
A 		8.7
(-1.2)
A 		4.8
(-3)
A 		13
avr 14.7
(1.1) 		20.4
(3) 		15.8
(1.5) 		6.1
(-1.8) 		12.2
(0.3) 		2.5
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16910
Sequence Type Exemplar sequence
Representative Public ID F45E1.2 NCBI
Target Description F45E1.2 /REP_DB=WormBase Gene ID /WP=CE01939 /TR=Q09985 /GB=AAB04899.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076947 NCBI Caenorhabditis elegans F45E1.2 (F45E1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004159 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8003675:8004019:1 11/11 None
F45E1.2 ENSEMBL cdna:known chromosome:CEL140:X:8003675:8004019:1 gene:F45E1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8003673-8004018(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E1.2
Entrez Gene 185791 Entrez gene
SwissProt Q09985 EMBL-EBI
WormBase CE01939 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04899 Hypothetical protein F45E1.2 [Caenorhabditis elegans] ref|NP_509348.1| F45E1.2 [Caenorhabditis elegans] 3.0E-51
blast CAE70333 Hypothetical protein CBG16868 [Caenorhabditis briggsae] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:183046_AT
gatgagatagtggcgctcgaacccgccactacacacgtggctcgtcgctccaaactcgac
gaacttctacagtcggtcgccaccggtggagccactccgagaagcaactcgtggagccga
gaacagcaagcggacatgcaggcccaccagctcacacaatctgctcgctcaccaagaagc
aaggcaagtcaaggctatctgtcttatttcggccatctttccaacccttctcccgcgcga
cttccgattcacgcgttttttttgttgagttactactactactacttttcttacaaacat
gcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGATAGTGGCGCTCGAACCCG 332 411 19 Antisense
CGACGAACTTCTACAGTCGGTCGCC 574 251 75 Antisense
GGAGCCACTCCGAGAAGCAACTCGT 57 523 106 Antisense
GCAACTCGTGGAGCCGAGAACAGCA 573 317 122 Antisense
AACAGCAAGCGGACATGCAGGCCCA 583 135 140 Antisense
AATCTGCTCGCTCACCAAGAAGCAA 583 169 176 Antisense
GCAAGGCAAGTCAAGGCTATCTGTC 508 321 197 Antisense
GGCTATCTGTCTTATTTCGGCCATC 634 537 211 Antisense
CGCGACTTCCGATTCACGCGTTTTT 364 255 254 Antisense
GATTCACGCGTTTTTTTTGTTGAGT 463 431 264 Antisense
TACTACTTTTCTTACAAACATGCAT 578 645 298 Antisense
Sequence Source Affymetrix Proprietary Database