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[183043_at]

Description W03A5.6 /REP_DB=WormBase Gene ID /WP=CE01424 /TR=Q23140 /GB=AAA50732.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 01      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 32.8
(-2.4)
A 		21
(-3)
A 		71.5
(-0.3)
A 		133
(3)
A 		112
B 45.6
(-0.1)
A 		41.2
(-0.4)
A 		8.4
(-3)
A 		84.7
(3)
M 		76
C 49.6
(-1.9)
A 		36.1
(-3)
A 		44.8
(-2.3)
A 		108.5
(3)
A 		72
avr 42.7
(-2.2) 		32.8
(-3) 		41.6
(-2.3) 		108.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 37.7
(-1.4)
A 		55.2
(0.9)
A 		25.5
(-3)
A 		67.8
(2.5)
A 		49.5
(0.1)
A 		71.7
(3)
A 		46
B 35.3
(3)
A 		16.5
(-0.4)
A 		2.5
(-3)
A 		22.9
(0.7)
A 		7.9
(-2)
A 		8.4
(-1.9)
A 		33
C 34.2
(-1.2)
A 		53.6
(0.9)
A 		26.4
(-2.1)
A 		18.5
(-3)
A 		27.2
(-2)
A 		72.1
(3)
A 		54
avr 35.7
(0.2) 		41.8
(1.4) 		18.1
(-3) 		36.4
(0.4) 		28.2
(-1.1) 		50.7
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12
(-0)
A 		4.6
(-3)
A 		18.7
(2.7)
A 		19.5
(3)
A 		15
B 14.5
(1.7)
A 		10.2
(0.1)
A 		2
(-3)
A 		18.1
(3)
M 		16
C 16.4
(1.6)
A 		10.4
(-3)
A 		15.6
(0.9)
A 		18.3
(3)
A 		8
avr 14.3
(0.5) 		8.4
(-3) 		12.1
(-0.8) 		18.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.9
(-2.4)
A 		19.6
(3)
A 		5.5
(-3)
A 		17.2
(2)
A 		15
(1)
A 		17.5
(2.1)
A 		14
B 12.3
(3)
A 		5.5
(-0.5)
A 		0.6
(-3)
A 		6.1
(-0.2)
A 		3.2
(-1.7)
A 		3.1
(-1.7)
A 		12
C 12.7
(-0.4)
A 		16.3
(0.7)
A 		6.7
(-2.1)
A 		3.7
(-3)
A 		8.8
(-1.5)
A 		24.1
(3)
A 		20
avr 10.6
(0.6) 		13.8
(2.4) 		4.3
(-3) 		9
(-0.3) 		9
(-0.3) 		14.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183043_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6759
Sequence Type Exemplar sequence
Representative Public ID W03A5.6 NCBI
Target Description W03A5.6 /REP_DB=WormBase Gene ID /WP=CE01424 /TR=Q23140 /GB=AAA50732.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065757 NCBI Caenorhabditis elegans W03A5.6 (W03A5.6) mRNA, complete cds. 11/11 None
W03A5.6 ENSEMBL cdna:known chromosome:CEL140:III:5440069:5440442:-1 gene:W03A5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021504 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5440067-5440441(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03A5.6
Entrez Gene 189142 Entrez gene
SwissProt Q23140 EMBL-EBI
WormBase CE01424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50732 Hypothetical protein W03A5.6 [Caenorhabditis elegans] ref|NP_498158.1| W03A5.6 [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:183043_AT
tcagatgccccaccaaatgtcgtggttccggcttcaaaaagcgatggaaatatcaaaagc
agcagcaaccgtcggagctcagaaacatcacatcgagaagcggccgctggatttttagtg
gaagaagctcggatgtcgccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATGCCCCACCAAATGTCGTGG 688 623 62 Antisense
TGCCCCACCAAATGTCGTGGTTCCG 292 583 67 Antisense
TGTCGTGGTTCCGGCTTCAAAAAGC 630 557 79 Antisense
AATATCAAAAGCAGCAGCAACCGTC 138 173 110 Antisense
CAGCAGCAACCGTCGGAGCTCAGAA 562 203 121 Antisense
AACCGTCGGAGCTCAGAAACATCAC 226 147 128 Antisense
GTCGGAGCTCAGAAACATCACATCG 556 471 132 Antisense
AACATCACATCGAGAAGCGGCCGCT 500 135 145 Antisense
ATCACATCGAGAAGCGGCCGCTGGA 542 27 148 Antisense
GCGGCCGCTGGATTTTTAGTGGAAG 685 293 161 Antisense
TGGAAGAAGCTCGGATGTCGCCGGC 132 547 180 Antisense
Sequence Source Affymetrix Proprietary Database