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[183042_s_at]

Description C34H3.1 /REP_DB=WormBase Gene ID /WP=CE23570 /TR=Q9N5X7 /GB=AAF39762.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 54      6grp_cgc > 50      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 159.5
(3)
A 		54.8
(-2)
A 		67.8
(-1.4)
A 		35.1
(-3)
A 		124
B 156.4
(3)
A 		105.5
(-0.8)
A 		122.9
(0.5)
A 		75.4
(-3)
A 		81
C 112.1
(3)
A 		101.4
(0.9)
A 		81.9
(-3)
A 		97.5
(0.1)
A 		30
avr 142.7
(3) 		87.2
(-1.5) 		90.9
(-1.2) 		69.3
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 116.3
(2.6)
A 		57.4
(-2.1)
A 		121.5
(3)
A 		121.6
(3)
A 		45.6
(-3)
A 		75.2
(-0.7)
A 		76
B 135
(3)
A 		109.3
(1.4)
A 		81.8
(-0.3)
A 		85
(-0.1)
A 		133.8
(2.9)
A 		37.7
(-3)
A 		97
C 130.2
(0.4)
P 		188.3
(3)
A 		98.2
(-1.1)
A 		183.1
(2.8)
A 		56.4
(-3)
A 		65.4
(-2.6)
A 		132
avr 127.2
(2.8) 		118.3
(2) 		100.5
(0.5) 		129.9
(3) 		78.6
(-1.4) 		59.4
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 58.1
(3)
A 		11.9
(-2.2)
A 		17.7
(-1.6)
A 		5.1
(-3)
A 		53
B 49.9
(3)
A 		26.1
(-1.2)
A 		28.5
(-0.8)
A 		16.1
(-3)
A 		34
C 37.1
(3)
A 		29.1
(0.7)
A 		28.5
(0.5)
A 		16.4
(-3)
A 		21
avr 48.4
(3) 		22.4
(-1.3) 		24.9
(-0.9) 		12.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 21.4
(-0.3)
A 		20.4
(-0.7)
A 		26.5
(1.5)
A 		30.8
(3)
A 		13.8
(-3)
A 		18.3
(-1.4)
A 		17
B 47
(1.9)
A 		36.4
(0.3)
A 		19.9
(-2.1)
A 		22.5
(-1.7)
A 		54.4
(3)
A 		14.1
(-3)
A 		40
C 48.3
(1.6)
P 		57.5
(3)
A 		25
(-2)
A 		36.8
(-0.2)
A 		18.3
(-3)
A 		21.9
(-2.4)
A 		39
avr 38.9
(3) 		38.1
(2.8) 		23.8
(-1.4) 		30
(0.4) 		28.8
(0.1) 		18.1
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183042_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16091
Sequence Type Exemplar sequence
Representative Public ID C34H3.1 NCBI
Target Description C34H3.1 /REP_DB=WormBase Gene ID /WP=CE23570 /TR=Q9N5X7 /GB=AAF39762.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076630 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-275) (tag-275) mRNA, complete cds. 11/11 None
GENEFINDER00000041178 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6142605:6150443:-1 11/11 None
C34H3.1 ENSEMBL cdna:known chromosome:CEL140:X:6142449:6150499:-1 gene:C34H3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041175 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6142604-6150443(-) 96.46 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-275
Ensembl C34H3.1
Entrez Gene 180886 Entrez gene
SwissProt Q9N5X7 EMBL-EBI
WormBase CE35421 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39762 Hypothetical protein C34H3.1 [Caenorhabditis elegans] ref|NP_509031.2| Temporarily Assigned Gene name family member (tag-275) [Caenorhabditis elegans] 0.0
blast CAE68878 Hypothetical protein CBG14841 [Caenorhabditis briggsae] 0.0
blast AAK68351 Hypothetical protein F27D9.7 [Caenorhabditis elegans] ref|NP_509295.1| F27D9.7 [Caenorhabditis elegans] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001590 EMBL-EBI Peptidase M12B, ADAM/reprolysin 6.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509031.2 1 281-303
C34H3.1 1 281-303
GENEFINDER00000041178 3 281-303,522-541,545-567
Sequence
Target Sequence 
>C. ELEGANS:183042_S_AT
gggcaaattcaaattctggccgccagtccatatcaaaataggaaaatgtcacactcctcg
atttctggaagcaacactattcttgtatcgaatgattctcgatttgcaacgatccaaagg
ccgaaggttcctccgccgccaccaccaccgaaaactactattcaagtagtagcccccgga
tctggtcaacaatacgagacgacaaaagttttcggatcataccgagaaagcttttatgac
gatttttctgatgacgaattcgaggagcaagaagtgccatccgcatacccactacctccg
ggagtgccaacgtgcccggcatacccgccaaatgttccaataaaccgagtaacgcaatgc
ttgattctaccacaaaacacacattcctgcgccccatcatcacatcaaacatttcatttt
gatgctggagccgttttaaacattcatatgtcaattctttcctttcaattttatgggttt
tatgtgcaagattggcttttcagcgcccattgttttttttatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAAATTCAAATTCTGGCCGCCA 666 493 1006 Antisense
GGCCGCCAGTCCATATCAAAATAGG 406 541 1023 Antisense
TCACACTCCTCGATTTCTGGAAGCA 116 629 1054 Antisense
ACTATTCAAGTAGTAGCCCCCGGAT 336 101 1162 Antisense
CCCCCGGATCTGGTCAACAATACGA 119 261 1178 Antisense
GAGCAAGAAGTGCCATCCGCATACC 681 389 1270 Antisense
TCCGGGAGTGCCAACGTGCCCGGCA 497 593 1302 Antisense
CATACCCGCCAAATGTTCCAATAAA 609 213 1325 Antisense
TACCACAAAACACACATTCCTGCGC 230 649 1373 Antisense
CAAGATTGGCTTTTCAGCGCCCATT 19 185 1492 Antisense
CAGCGCCCATTGTTTTTTTTATTTG 312 203 1506 Antisense
Sequence Source Affymetrix Proprietary Database