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[183041_s_at]

Description ZK1058.4 /REP_DB=WormBase Gene ID /WP=CE01104 /TR=Q23382 /GB=CAA84678.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 66      6grp_total > 90      4grp_total > 01      6grp_cgc > 40      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3588
1 2 3 4 range
A 1666.2
(-1.5)
P 		1042.3
(-3)
P 		1576.1
(-1.7)
P 		3538.1
(3)
P 		2496
B 1749.7
(-2.5)
P 		1502.5
(-3)
P 		1863.8
(-2.3)
P 		4629.8
(3)
P 		3127
C 1758.8
(-2.3)
P 		1478.7
(-3)
P 		1778.9
(-2.3)
P 		4000.2
(3)
P 		2522
avr 1724.9
(-2.2) 		1341.2
(-3) 		1739.6
(-2.1) 		4056
(3) 		2715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 704
1 2 3 4 5 6 range
A 1624.4
(-0.9)
P 		1801.8
(1.2)
P 		1451.3
(-3)
P 		1957.6
(3)
P 		1498.8
(-2.4)
P 		1615.1
(-1.1)
P 		506
B 1635.7
(1.2)
P 		1609.5
(0.9)
P 		1254
(-3)
P 		1796.4
(3)
P 		1565.6
(0.4)
P 		1419.6
(-1.2)
P 		542
C 1770
(3)
P 		1593.9
(-0.5)
P 		1588.5
(-0.7)
P 		1527.7
(-1.9)
P 		1472.2
(-3)
P 		1513.4
(-2.2)
P 		298
avr 1676.7
(1.5) 		1668.4
(1.3) 		1431.3
(-3) 		1760.6
(3) 		1512.2
(-1.5) 		1516
(-1.5) 		329
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 606.7
(3)
P 		226.3
(-3)
P 		412
(-0.1)
P 		517.9
(1.6)
P 		380
B 558
(-1.2)
P 		371.1
(-3)
P 		431.9
(-2.4)
P 		986.6
(3)
P 		616
C 582.2
(0.8)
P 		425.1
(-3)
P 		620
(1.7)
P 		674.5
(3)
P 		249
avr 582.3
(0.8) 		340.8
(-3) 		488
(-0.7) 		726.3
(3) 		386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 299.4
(-3)
P 		640.8
(3)
P 		316.1
(-2.7)
P 		496.5
(0.5)
P 		452.3
(-0.3)
P 		393.2
(-1.4)
P 		341
B 569.1
(1.8)
P 		535.7
(1.2)
P 		304.5
(-3)
P 		475.8
(0.1)
P 		636.1
(3)
P 		529.4
(1.1)
P 		332
C 656.1
(3)
P 		486.4
(0.1)
P 		404.3
(-1.3)
P 		307.2
(-3)
P 		476.4
(-0.1)
P 		506.6
(0.4)
P 		349
avr 508.2
(1.7) 		554.3
(3) 		341.6
(-3) 		426.5
(-0.6) 		521.6
(2.1) 		476.4
(0.8) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183041_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7047
Sequence Type Exemplar sequence
Representative Public ID ZK1058.4 NCBI
Target Description ZK1058.4 /REP_DB=WormBase Gene ID /WP=CE01104 /TR=Q23382 /GB=CAA84678.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065387 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-252) (tag-252) mRNA, complete cds. 11/11 None
SNAP00000000031 ENSEMBL cdna:SNAP chromosome:CEL140:III:3916971:3918501:1 11/11 None
GENEFINDER00000000040 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3916971:3918501:1 11/11 None
ZK1058.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3916908:3918784:1 gene:ZK1058.4 11/11 None
ZK1058.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3916942:3918784:1 gene:ZK1058.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3916970-3918501(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-252
Ensembl ZK1058.4
Entrez Gene 175505 Entrez gene
SwissProt Q23382 EMBL-EBI
WormBase CE01104 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248530_AT expressed protein at
CANINE:1591365_AT similar to CG17593-PA cfa
CANINE_2:CFAAFFX.19928.1.S1_AT similar to CG17593-PA cfa
DROSOPHILA_2:1625528_AT dm
DROSGENOME1:145716_AT dm
CHICKEN:GGA.13531.1.S1_AT similar to RIKEN cDNA 2610204L23 gga
CHICKEN:GGA.13531.1.S1_S_AT similar to RIKEN cDNA 2610204L23 gga
HG-U133A:217814_AT GK001 protein hs
HG-U133_PLUS_2:217814_AT GK001 protein hs
HG-U133A_2:217814_AT GK001 protein hs
HG-U133B:222432_S_AT GK001 protein hs
HG-U133_PLUS_2:222432_S_AT GK001 protein hs
HU35KSUBA:T39176_S_AT GK001 protein hs
HU35KSUBA:RC_AA121127_AT GK001 protein hs
HU35KSUBA:RC_AA620795_AT GK001 protein hs
HU35KSUBB:RC_R93507_AT GK001 protein hs
HU35KSUBC:RC_W85861_AT GK001 protein hs
U133_X3P:G9910241_3P_AT GK001 protein hs
U133_X3P:G11640589_3P_A_AT GK001 protein hs
HG-U95C:48626_AT GK001 protein hs
HG-U95C:63405_AT GK001 protein hs
HG-U95C:63615_AT GK001 protein hs
HG-U95D:69200_AT GK001 protein hs
MU11KSUBA:AA185452_S_AT RIKEN cDNA 2610204L23 gene mm
MG-U74AV2:94069_R_AT RIKEN cDNA 2610204L23 gene mm
MG-U74CV2:167314_AT RIKEN cDNA 2610204L23 gene mm
MOE430A:1424637_S_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430A_2:1424637_S_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430_2:1424637_S_AT RIKEN cDNA 2610204L23 gene mm
MOE430A:1424636_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430A_2:1424636_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430_2:1424636_AT RIKEN cDNA 2610204L23 gene mm
MOE430A:1451420_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430A_2:1451420_AT RIKEN cDNA 2610204L23 gene mm
MOUSE430_2:1451420_AT RIKEN cDNA 2610204L23 gene mm
MU19KSUBB:TC34610_AT RIKEN cDNA 2610204L23 gene (2610204L23Rik), mRNA mm
MU19KSUBC:TC36933_AT RIKEN cDNA 2610204L23 gene (2610204L23Rik), mRNA mm
RG-U34C:RC_AI171882_AT similar to adipocyte-specific protein 4 (predicted) rn
RAE230A:1399003_AT similar to adipocyte-specific protein 4 (predicted) rn
RAT230_2:1399003_AT similar to adipocyte-specific protein 4 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA84678 Hypothetical protein ZK1058.4 [Caenorhabditis elegans] ref|NP_497788.1| Temporarily Assigned Gene name family member (tag-252) [Caenorhabditis elegans] 0.0
blast CAE60080 Hypothetical protein CBG03600 [Caenorhabditis briggsae] 1.0E-151
Sequence
Target Sequence 
>C. ELEGANS:183041_S_AT
tcgacttgaacagctttgcctcggaaagaaaacaagcagctcaacaattcaatcttcctg
cttcatggcaagtatatgctgatcaaaatgaagttgtattctcaattctcgacccaggag
ttgtatcactgctcaaaaaacacgaagatgctattgaattcatccatatctcggatcaat
tcacaggaccaaaaccagcagaaggggaaagctatactcgacttccagaagcccaacgat
atatgtttgtatcactgaacttgcagtatttgggacaagatgaagaatcagtaatggaaa
ttctcaacttggtgttttatttgatcgataaggcaagaaagatgaagcttagcaaagatg
ccaaggtgaaagcagagagaaggagaaaggagtttgaagatgctttcttgaagcagactc
atcagttcagacaagaagctgctcaagctagacgtgaagagaaaactcgtgagcgaaagc
agaaattaatggacgaaagtgatccggagagacagaagcggttggaggccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACTTGAACAGCTTTGCCTCGGA 458 601 749 Antisense
AGCAGCTCAACAATTCAATCTTCCT 283 77 783 Antisense
CAATCTTCCTGCTTCATGGCAAGTA 33 181 798 Antisense
TATTCTCAATTCTCGACCCAGGAGT 273 663 845 Antisense
GACCCAGGAGTTGTATCACTGCTCA 659 381 859 Antisense
ATCTCGGATCAATTCACAGGACCAA 118 33 916 Antisense
GAAAGCTATACTCGACTTCCAGAAG 29 361 955 Antisense
GACTTCCAGAAGCCCAACGATATAT 576 365 968 Antisense
GCTTTCTTGAAGCAGACTCATCAGT 195 305 1150 Antisense
AGCTGCTCAAGCTAGACGTGAAGAG 393 81 1185 Antisense
GAGACAGAAGCGGTTGGAGGCCAAG 277 393 1257 Antisense
Sequence Source Affymetrix Proprietary Database