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[183040_at]

Description Y69H2.10 /REP_DB=WormBase Gene ID /WP=CE22828 /TR=Q9U1U0 /GB=CAB63407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 990
1 2 3 4 range
A 141.9
(-2.5)
A 		56.8
(-3)
A 		101.9
(-2.7)
A 		1038.9
(3)
P 		982
B 146.3
(-2.3)
A 		64.4
(-3)
A 		57.7
(-3)
A 		869.8
(3)
P 		812
C 113.5
(-2.6)
A 		80.3
(-2.8)
A 		49.2
(-3)
A 		968.4
(3)
P 		919
avr 133.9
(-2.6) 		67.2
(-3) 		69.6
(-3) 		959
(3) 		892

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 85.1
(-3)
A 		135.2
(-1.6)
A 		123.7
(-1.9)
A 		133.3
(-1.6)
A 		142.4
(-1.3)
A 		292.8
(3)
P 		208
B 163.5
(-1.3)
A 		90.2
(-3)
A 		94.6
(-2.9)
A 		94.8
(-2.9)
A 		180.5
(-0.9)
A 		347.2
(3)
P 		257
C 148.1
(-2.8)
M 		141.2
(-3)
A 		143.2
(-3)
A 		150.7
(-2.8)
A 		191.7
(-1.8)
P 		392.7
(3)
P 		252
avr 132.2
(-2.7) 		122.2
(-3) 		120.5
(-3) 		126.3
(-2.8) 		171.5
(-1.6) 		344.2
(3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 51.7
(-1.3)
A 		12.3
(-3)
A 		26.6
(-2.4)
A 		152.1
(3)
P 		140
B 46.7
(-1.8)
A 		15.9
(-2.9)
A 		13.4
(-3)
A 		185.4
(3)
P 		172
C 37.6
(-2.2)
A 		23.1
(-2.8)
A 		17.1
(-3)
A 		163.3
(3)
P 		146
avr 45.3
(-1.9) 		17.1
(-3) 		19
(-2.9) 		166.9
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 15.7
(-3)
A 		48.1
(0.5)
A 		26.9
(-1.8)
A 		33.8
(-1)
A 		43
(-0.1)
A 		71.3
(3)
P 		56
B 56.9
(-1.1)
A 		30
(-2.6)
A 		23
(-3)
A 		25.1
(-2.9)
A 		73.4
(-0.2)
A 		129.5
(3)
P 		107
C 54.9
(-1.5)
M 		43.1
(-2.2)
A 		36.4
(-2.6)
A 		30.3
(-3)
A 		62
(-1.1)
P 		131.5
(3)
P 		101
avr 42.5
(-2) 		40.4
(-2.2) 		28.8
(-3) 		29.7
(-2.9) 		59.5
(-0.8) 		110.8
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12708
Sequence Type Exemplar sequence
Representative Public ID Y69H2.10 NCBI
Target Description Y69H2.10 /REP_DB=WormBase Gene ID /WP=CE22828 /TR=Q9U1U0 /GB=CAB63407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029109(10), NM_001029108(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029109 NCBI Caenorhabditis elegans Y69H2.10b (Y69H2.10) mRNA, complete cds. 10/11 None
NM_001029108 NCBI Caenorhabditis elegans Y69H2.10a (Y69H2.10) mRNA, complete cds. 10/11 None
SNAP00000002598 ENSEMBL cdna:SNAP chromosome:CEL140:V:18666926:18681432:1 10/11 None
GENEFINDER00000002611 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18672898:18686795:1 10/11 None
Y69H2.10b ENSEMBL cdna:known chromosome:CEL140:V:18672889:18686934:1 gene:Y69H2.10 10/11 None
Y69H2.10a ENSEMBL cdna:known chromosome:CEL140:V:18672898:18678693:1 gene:Y69H2.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18674877-18678593(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y69H2.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60800 Hypothetical protein Y69H2.10b [Caenorhabditis elegans] ref|NP_001024280.1| Y69H2.10b [Caenorhabditis elegans] 0.0
blast CAB63407 Hypothetical protein Y69H2.10a [Caenorhabditis elegans] ref|NP_001024279.1| Y69H2.10a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.2E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-7
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 3.0E-9
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.7E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 2.2E-11
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.2E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.6E-10
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 1.3E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002611 2 440-459,461-483
Sequence
Target Sequence 
>C. ELEGANS:183040_AT
gcaacgcctacacttgttataccaaactggaagccccaaaatgcgtgggcgccaacgagg
agttctcggcgtgcaagtcgggctgtgagggtacctgtgaagaaccgtccccgccgtgca
tgaactcgaccacctgcacgtcaggatgtgcctgcatacgtggttatgtgaggatcaatg
gggtctgtgagctcatgtcaaagtgcccggttactgtaacggaaggtgtttcgtgtgctg
gcgctgaagtctacacggcgtgtatgccagagtgtgagaaaacgtgctcaggggtgccga
atcagttctgtatcgaagccaaaaacggaaccgctaccacaaaagccccggcaaaatgcc
tacccgggtgcacttgccggccagcttacaagcgagattctgacagtggccagtgtgtcc
attccaggcaatgttttgggacaaccaaatgcagtgacaacgaggcgtggtccaagtgtc
ataactgcgaaaaagtgtgcttccaaactgcaaatccgagctgcaaggcttgctggagtg
gctgtggatgcttggatgggttctcgaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACGCCTACACTTGTTATACCAA 37 321 38 Antisense
GAAGCCCCAAAATGCGTGGGCGCCA 482 343 67 Antisense
GCAAGTCGGGCTGTGAGGGTACCTG 32 183 110 Antisense
GACCACCTGCACGTCAGGATGTGCC 372 383 165 Antisense
GTCAAAGTGCCCGGTTACTGTAACG 194 461 234 Antisense
TGCTGGCGCTGAAGTCTACACGGCG 80 581 273 Antisense
TGCTCAGGGGTGCCGAATCAGTTCT 610 559 322 Antisense
TGACAGTGGCCAGTGTGTCCATTCC 446 571 438 Antisense
GGCGTGGTCCAAGTGTCATAACTGC 339 541 501 Antisense
GCAAGGCTTGCTGGAGTGGCTGTGG 422 321 560 Antisense
GATGCTTGGATGGGTTCTCGAGGAG 428 413 584 Antisense
Sequence Source Affymetrix Proprietary Database