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[183039_at]

Description C18H9.3 /REP_DB=WormBase Gene ID /WP=CE01803 /TR=Q09482 /GB=AAC46688.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 34.2
(-1.8)
A 		21.1
(-3)
A 		81
(2.6)
A 		85.5
(3)
A 		64
B 72.4
(1.6)
A 		23.1
(-3)
A 		87.5
(2.9)
A 		88.1
(3)
A 		65
C 55.2
(-3)
A 		73.6
(-2.3)
A 		72.2
(-2.4)
A 		220.2
(3)
A 		165
avr 53.9
(-2) 		39.3
(-3) 		80.2
(-0.3) 		131.3
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 90.7
(3)
A 		53.7
(0.2)
A 		12.7
(-3)
A 		12.4
(-3)
A 		74.9
(1.8)
A 		22.2
(-2.2)
A 		78
B 52.1
(1.2)
A 		67.9
(3)
A 		14.6
(-3)
A 		52.6
(1.3)
A 		15
(-3)
A 		16.1
(-2.8)
A 		53
C 78.7
(3)
A 		20.8
(-3)
A 		21.5
(-2.9)
A 		20.5
(-3)
A 		39.4
(-1.1)
A 		54.7
(0.5)
A 		58
avr 73.8
(3) 		47.5
(0.3) 		16.3
(-3) 		28.5
(-1.7) 		43.1
(-0.2) 		31
(-1.5) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 12.5
(-0.1)
A 		4.6
(-3)
A 		21.2
(3)
A 		12.5
(-0.1)
A 		17
B 23.1
(3)
A 		5.7
(-3)
A 		20.3
(2)
A 		18.8
(1.5)
A 		17
C 18.3
(-3)
A 		21.2
(-2.1)
A 		25.2
(-0.8)
A 		37.1
(3)
A 		19
avr 18
(0.7) 		10.5
(-3) 		22.2
(2.7) 		22.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.7
(1.2)
A 		19.1
(1.9)
A 		2.8
(-3)
A 		3.1
(-2.9)
A 		22.6
(3)
A 		5.4
(-2.2)
A 		20
B 18.1
(1.6)
A 		22.6
(3)
A 		3.6
(-3)
A 		13.9
(0.3)
A 		6.1
(-2.2)
A 		6
(-2.2)
A 		19
C 29.2
(3)
A 		6.3
(-2.5)
A 		5.5
(-2.7)
A 		4.1
(-3)
A 		12.7
(-0.9)
A 		18.3
(0.4)
A 		25
avr 21.3
(3) 		16
(1.2) 		4
(-3) 		7
(-2) 		13.8
(0.4) 		9.9
(-1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5927
Sequence Type Exemplar sequence
Representative Public ID C18H9.3 NCBI
Target Description C18H9.3 /REP_DB=WormBase Gene ID /WP=CE01803 /TR=Q09482 /GB=AAC46688.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062959 NCBI Caenorhabditis elegans C18H9.3 (C18H9.3) mRNA, complete cds. 11/11 None
SNAP00000038936 ENSEMBL cdna:SNAP chromosome:CEL140:II:6684192:6688583:1 11/11 None
GENEFINDER00000038944 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6684192:6691677:1 11/11 None
C18H9.3 ENSEMBL cdna:known chromosome:CEL140:II:6684192:6689466:1 gene:C18H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6684188-6688580(+) 97.93 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H9.3
Entrez Gene 174103 Entrez gene
SwissProt Q09482 EMBL-EBI
WormBase CE01803 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46688 Hypothetical protein C18H9.3 [Caenorhabditis elegans] ref|NP_495360.1| C18H9.3 [Caenorhabditis elegans] 0.0
blast CAE66041 Hypothetical protein CBG11240 [Caenorhabditis briggsae] 0.0
blast AAC46687 Hypothetical protein C18H9.2 [Caenorhabditis elegans] ref|NP_495361.1| C18H9.2 [Caenorhabditis elegans] sp|Q09237|YQ82_CAEEL Hypothetical protein C18H9.2 in chromosome II 3.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR003169 EMBL-EBI GYF 5.8E-25
Pfam IPR003169 EMBL-EBI GYF 5.8E-25
Sequence
Target Sequence 
>C. ELEGANS:183039_AT
cacacgaaaactgctccatgggctgcaaaggtcgaagctcctcaaaaaagtgagaagaca
ttgcttgagattcagaaagaagaagaacgtaaattcaaagtggagcaggagaagaacgcc
aagttgaaggcaaaagaacaagcttccaatatcacatccgctgctgctatcgctggagac
aaaagtggtggactttggggagcatccaagacttgggctgctccagagtcaaatagctca
aaaagctatgtttctccattccttgatggaccatctttggaagcagcgaacaagatggct
ttgcaaaagaagaactcccagccaaagatagctgttccagccaagtctgctccgacttca
gcaaaagttgccactccagtcaaagcaaaagcaacagcagtggccgtatcgtctcctgct
accaatcaaaagacgaaaaagaccaaggaacaggttgctacggatgagttgcagcagtgg
tttgtcaaacgattccagcagttttcgactcaagttgattcttcgaccctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACGAAAACTGCTCCATGGGCTG 522 195 2179 Antisense
TGGGCTGCAAAGGTCGAAGCTCCTC 600 553 2197 Antisense
CAAGCTTCCAATATCACATCCGCTG 58 187 2317 Antisense
AAGACTTGGGCTGCTCCAGAGTCAA 571 153 2386 Antisense
AAAAGCTATGTTTCTCCATTCCTTG 671 131 2419 Antisense
ATAGCTGTTCCAGCCAAGTCTGCTC 539 21 2506 Antisense
AGTCTGCTCCGACTTCAGCAAAAGT 330 61 2522 Antisense
AGCAACAGCAGTGGCCGTATCGTCT 461 75 2568 Antisense
TCGTCTCCTGCTACCAATCAAAAGA 260 605 2587 Antisense
GATTCCAGCAGTTTTCGACTCAAGT 635 431 2669 Antisense
ACTCAAGTTGATTCTTCGACCCTGT 327 99 2686 Antisense
Sequence Source Affymetrix Proprietary Database