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[183037_at]

Description Y39B6A.G /REP_DB=WormBase Gene ID /WP=CE21667 /TR=Q9NEI5 /GB=CAB61064.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 31.7
(0.6)
A 		47.9
(3)
P 		47.5
(2.9)
A 		8
(-3)
A 		40
B 36.2
(2.3)
A 		24.5
(-3)
A 		24.5
(-3)
A 		37.7
(3)
A 		13
C 47.7
(3)
M 		20.7
(-3)
A 		23.9
(-2.3)
A 		29.2
(-1.1)
A 		27
avr 38.5
(3) 		31
(-0.3) 		32
(0.1) 		25
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.8
(-0.3)
A 		7.6
(-1.2)
A 		13.2
(1.1)
A 		17.7
(3)
A 		3.2
(-3)
A 		5.1
(-2.2)
A 		15
B 5
(-2.4)
A 		18.8
(-0.1)
A 		37.4
(3)
A 		1.2
(-3)
A 		1.8
(-2.9)
A 		19.5
(0)
A 		36
C 3.2
(-2.5)
A 		3.8
(-2.3)
A 		1.3
(-3)
A 		2.7
(-2.6)
A 		23
(3)
A 		11.5
(-0.2)
A 		22
avr 6
(-3) 		10.1
(-0.8) 		17.3
(3) 		7.2
(-2.4) 		9.3
(-1.2) 		12
(0.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.6
(2.6)
A 		10.4
(1.9)
P 		12.4
(3)
A 		1.2
(-3)
A 		11
B 11.5
(3)
A 		6
(-2.7)
A 		5.7
(-3)
A 		8
(-0.6)
A 		6
C 15.8
(3)
M 		6
(-2.4)
A 		8.3
(-1.1)
A 		4.9
(-3)
A 		11
avr 13
(3) 		7.5
(-1) 		8.8
(-0) 		4.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(-1.6)
A 		2.7
(-0.1)
A 		2.9
(0.3)
A 		4.5
(3)
A 		1
(-3)
A 		1.3
(-2.5)
A 		4
B 1.7
(-2)
A 		6.3
(1.1)
A 		9.1
(3)
A 		0.3
(-3)
A 		0.7
(-2.7)
A 		7.3
(1.8)
A 		9
C 1.2
(-2.2)
A 		1.2
(-2.2)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		7.4
(3)
A 		3.9
(0)
A 		7
avr 1.6
(-3) 		3.4
(1.2) 		4.1
(2.8) 		1.8
(-2.5) 		3
(0.2) 		4.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19440
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.G NCBI
Target Description Y39B6A.G /REP_DB=WormBase Gene ID /WP=CE21667 /TR=Q9NEI5 /GB=CAB61064.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171569(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171569 NCBI Caenorhabditis elegans Y39B6A.38 (Y39B6A.38) mRNA, complete cds. 10/11 None
SNAP00000030527 ENSEMBL cdna:SNAP chromosome:CEL140:V:18969055:19010864:-1 11/11 None
GENEFINDER00000030700 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18988949:18992941:-1 11/11 None
Y39B6A.38 ENSEMBL cdna:known chromosome:CEL140:V:18989237:18992941:-1 gene:Y39B6A.38 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18988948-18992941(-) 95.29 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.38
Entrez Gene 180241 Entrez gene
SwissProt Q8MYM6 EMBL-EBI
WormBase CE37856 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31830 Hypothetical protein Y39B6A.38 [Caenorhabditis elegans] ref|NP_741659.2| Y39B6A.38 [Caenorhabditis elegans] 1.0E-173
blast CAD31830 Hypothetical protein Y39B6A.38 [Caenorhabditis elegans] ref|NP_741659.2| Y39B6A.38 [Caenorhabditis elegans] 1.0E-158
blast CAD31830 Hypothetical protein Y39B6A.38 [Caenorhabditis elegans] ref|NP_741659.2| Y39B6A.38 [Caenorhabditis elegans] 1.0E-137
blast CAE56103 Hypothetical protein CBG23701 [Caenorhabditis briggsae] 4.0E-61
blast CAD31831 Hypothetical protein Y39B6A.40 [Caenorhabditis elegans] ref|NP_741657.2| Y39B6A.40 [Caenorhabditis elegans] 1.0E-51
blast CAD57708 Hypothetical protein Y39B6A.43b [Caenorhabditis elegans] ref|NP_741653.2| Y39B6A.43b [Caenorhabditis elegans] 5.0E-50
blast XP_397364 PREDICTED: similar to ENSANGP00000027134 [Apis mellifera] 9.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0019
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0019
Sequence
Target Sequence 
>C. ELEGANS:183037_AT
gacagctcaatcgattagtactacaacgactacgactacttttgcgtcttttcctgccac
cccggacagtattccaccgccgattccacaaagaatcacaccgtcacctctaccgagagt
catcgaagaggaaaaacgaattaccacaacagattcatcaacacaaactacagaattact
ctattctgaggaagatgtgaagagctttttctcgaaaatcggccatcaaatcgacgattt
aattggagaagagattcaggcaactgatgggcaaggaattgaacgatggaaggaacgttg
tacagctttgaggactcaaaattcggaattagaagccgaaagagcacgctggaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGCTCAATCGATTAGTACTACA 287 369 810 Antisense
GATTAGTACTACAACGACTACGACT 61 369 822 Antisense
GACTACGACTACTTTTGCGTCTTTT 523 365 837 Antisense
TCCACCGCCGATTCCACAAAGAATC 30 589 882 Antisense
TTCCACAAAGAATCACACCGTCACC 648 695 893 Antisense
CGTCACCTCTACCGAGAGTCATCGA 286 247 911 Antisense
AACGAATTACCACAACAGATTCATC 223 145 944 Antisense
CGAAAATCGGCCATCAAATCGACGA 265 251 1022 Antisense
TCAGGCAACTGATGGGCAAGGAATT 562 621 1065 Antisense
GAACGTTGTACAGCTTTGAGGACTC 387 347 1102 Antisense
GAAGCCGAAAGAGCACGCTGGAAAA 13 345 1141 Antisense
Sequence Source Affymetrix Proprietary Database