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[183036_at]

Description F32B5.6 /REP_DB=WormBase Gene ID /WP=CE09853 /TR=O01848 /GB=AAB54212.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 95      6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2198
1 2 3 4 range
A 711.7
(-2.9)
P 		950.2
(-1.9)
P 		686.4
(-3)
P 		2178.1
(3)
P 		1492
B 954
(-2.6)
P 		804.9
(-3)
P 		918.4
(-2.7)
P 		2884.3
(3)
P 		2079
C 866.5
(-2.6)
P 		731.4
(-3)
P 		763.5
(-2.9)
P 		2660.4
(3)
P 		1929
avr 844.1
(-2.8) 		828.8
(-2.9) 		789.4
(-3) 		2574.3
(3) 		1785

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 488
(-3)
P 		592.3
(-1.8)
P 		540.1
(-2.4)
P 		566.3
(-2.1)
P 		938.1
(2.4)
P 		992.2
(3)
P 		504
B 540.4
(-1.8)
P 		562.7
(-1.6)
P 		405.2
(-3)
P 		573.9
(-1.5)
P 		1100.6
(3)
P 		854.8
(0.9)
P 		695
C 582.8
(-1.2)
P 		511.3
(-1.9)
P 		395.4
(-3)
P 		439.8
(-2.6)
P 		1005.5
(3)
P 		756
(0.5)
P 		610
avr 537.1
(-2) 		555.4
(-1.9) 		446.9
(-3) 		526.7
(-2.2) 		1014.7
(3) 		867.7
(1.4) 		568
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 259.1
(0.4)
P 		206.3
(-1.8)
P 		179.4
(-3)
P 		318.8
(3)
P 		139
B 304.2
(-1.5)
P 		198.8
(-3)
P 		212.8
(-2.8)
P 		614.6
(3)
P 		416
C 286.9
(-1.1)
P 		210.3
(-3)
P 		266.1
(-1.6)
P 		448.6
(3)
P 		238
avr 283.4
(-1.2) 		205.1
(-3) 		219.4
(-2.7) 		460.7
(3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 90
(-3)
P 		210.6
(0.7)
P 		117.6
(-2.1)
P 		143.6
(-1.3)
P 		283.1
(3)
P 		241.6
(1.7)
P 		193
B 188
(-1.5)
P 		187.3
(-1.5)
P 		98.4
(-3)
P 		152
(-2.1)
P 		447.2
(3)
P 		318.7
(0.8)
P 		349
C 216
(0.2)
P 		156
(-1.3)
P 		100.6
(-2.7)
P 		88.4
(-3)
P 		325.4
(3)
P 		253.1
(1.2)
P 		237
avr 164.7
(-1.6) 		184.6
(-1.1) 		105.5
(-3) 		128
(-2.5) 		351.9
(3) 		271.1
(1) 		246
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.313
Sequence Type Exemplar sequence
Representative Public ID F32B5.6 NCBI
Target Description F32B5.6 /REP_DB=WormBase Gene ID /WP=CE09853 /TR=O01848 /GB=AAB54212.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170836, NM_170835, NM_182057
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012570 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2668169:2672012:1 None
SNAP00000012556 ENSEMBL cdna:SNAP chromosome:CEL140:I:2668169:2672012:1 None
F32B5.6d.1 ENSEMBL cdna:known chromosome:CEL140:I:2668161:2672012:1 gene:F32B5.6 None
F32B5.6b ENSEMBL cdna:known chromosome:CEL140:I:2668169:2672409:1 gene:F32B5.6 A 
F32B5.6a ENSEMBL cdna:known chromosome:CEL140:I:2668168:2672913:1 gene:F32B5.6 A 
F32B5.6d.2 ENSEMBL cdna:known chromosome:CEL140:I:2668407:2672012:1 gene:F32B5.6 None
F32B5.6d.3 ENSEMBL cdna:known chromosome:CEL140:I:2668794:2672012:1 gene:F32B5.6 None
NM_182057 NCBI Caenorhabditis elegans F32B5.6d (F32B5.6) mRNA, complete cds. None
NM_170835 NCBI Caenorhabditis elegans F32B5.6a (F32B5.6) mRNA, complete cds. None
NM_170836 NCBI Caenorhabditis elegans F32B5.6b (F32B5.6) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2668168-2672065(+) 90.21 99.93
Public Domain and Genome References
Ensembl F32B5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR25644 Hypothetical protein F32B5.6a [Caenorhabditis elegans] ref|NP_740819.2| F32B5.6a [Caenorhabditis elegans] 0.0
blast AAR25645 Hypothetical protein F32B5.6b [Caenorhabditis elegans] ref|NP_740820.2| F32B5.6b [Caenorhabditis elegans] 0.0
blast CAE60492 Hypothetical protein CBG04107 [Caenorhabditis briggsae] 0.0
blast T29870 hypothetical protein F32B5.6 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:183036_AT
gatatggatccatcgttcgctaaaaagctactactggtttctgagaagtacaacttggag
attttgaagatggtgatcaacgggttccttgtcgatcaaatcattggaaactcgaacccg
ccaaaagagctcgtcaacattacacatgagctccaacagatggcccatgagatccgcgaa
aacgagaatatcgagaatcttgtcggagcagtcgtaacagatcttcaggagctcacacgt
cgagtccgtcgggtatcgctctcccacagtccatcacaatcgtcccatagcagacgttat
aagggatgtgtggcaaatttggcgagtttgccgaacttgccgactccaaaaaaattgcaa
tttaccgagtatgatggtcacggcaaatttgccgaatttgccggatttaccgtgctcggc
aaatttcaaaaatatgggcttgcggaattttccatgctcctctcccctcgctaccccaac
aaatggaagtggttctccatcggttccggctccattcgactccccgacaagccgcttcaa
acgagtttccctggcctaaacgatttcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGGATCCATCGTTCGCTAAAA 58 425 913 Antisense
ATCAACGGGTTCCTTGTCGATCAAA 548 25 988 Antisense
TCGAACCCGCCAAAAGAGCTCGTCA 286 599 1024 Antisense
ATGAGCTCCAACAGATGGCCCATGA 72 45 1058 Antisense
AACAGATCTTCAGGAGCTCACACGT 547 135 1128 Antisense
CCATCACAATCGTCCCATAGCAGAC 672 269 1183 Antisense
AATTTGCCGGATTTACCGTGCTCGG 557 173 1307 Antisense
GGGCTTGCGGAATTTTCCATGCTCC 308 493 1348 Antisense
ATGGAAGTGGTTCTCCATCGGTTCC 311 53 1395 Antisense
GACAAGCCGCTTCAAACGAGTTTCC 47 363 1438 Antisense
TCCCTGGCCTAAACGATTTCTTGAA 587 595 1460 Antisense
Sequence Source Affymetrix Proprietary Database