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[183034_at]

Description C16C8.8 /REP_DB=WormBase Gene ID /WP=CE08219 /TR=P91048 /GB=AAB37850.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 33      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 16.3
(-3)
A 		42.5
(1.7)
A 		48.9
(2.9)
A 		49.7
(3)
A 		33
B 19.3
(-3)
A 		50.1
(3)
A 		31.3
(-0.7)
A 		39.5
(0.9)
A 		31
C 15.8
(-3)
A 		36
(1.1)
A 		45.1
(3)
A 		35.2
(1)
A 		29
avr 17.1
(-3) 		42.9
(3) 		41.8
(2.7) 		41.5
(2.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 32.7
(-0.7)
A 		16
(-3)
A 		22.3
(-2.1)
A 		34.4
(-0.4)
A 		58.7
(3)
A 		40.5
(0.4)
A 		43
B 11.4
(-1.7)
A 		6.2
(-3)
A 		30
(3)
A 		6.1
(-3)
A 		7.8
(-2.6)
A 		13.3
(-1.2)
A 		24
C 7.3
(-2.9)
A 		31.4
(0.3)
A 		6.7
(-3)
A 		51.7
(3)
A 		34.1
(0.7)
A 		22.7
(-0.9)
A 		45
avr 17.1
(-3) 		17.9
(-2.7) 		19.7
(-2) 		30.7
(2) 		33.5
(3) 		25.5
(0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.9
(-3)
A 		9.2
(-0.1)
A 		12.8
(3)
A 		7.3
(-1.8)
A 		7
B 6.2
(-3)
A 		12.4
(3)
A 		7.3
(-1.9)
A 		8.4
(-0.9)
A 		6
C 5.2
(-3)
A 		10.3
(-0.1)
A 		15.7
(3)
A 		5.9
(-2.6)
A 		11
avr 5.8
(-3) 		10.6
(1.7) 		11.9
(3) 		7.2
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6
(-2.5)
A 		5.7
(-2.6)
A 		4.9
(-3)
A 		8.7
(-1.2)
A 		17.7
(3)
A 		9.9
(-0.7)
A 		13
B 4
(-0.5)
A 		2.1
(-2.5)
A 		7.3
(3)
A 		1.6
(-3)
A 		3.2
(-1.3)
A 		5
(0.6)
A 		6
C 2.7
(-2.4)
A 		9.6
(2.1)
A 		1.7
(-3)
A 		10.4
(2.6)
A 		11
(3)
A 		7.6
(0.8)
A 		9
avr 4.2
(-3) 		5.8
(-1.5) 		4.6
(-2.6) 		6.9
(-0.5) 		10.6
(3) 		7.5
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5973
Sequence Type Exemplar sequence
Representative Public ID C16C8.8 NCBI
Target Description C16C8.8 /REP_DB=WormBase Gene ID /WP=CE08219 /TR=P91048 /GB=AAB37850.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062151 NCBI Caenorhabditis elegans C16C8.8 (C16C8.8) mRNA, complete cds. 11/11 None
SNAP00000014787 ENSEMBL cdna:SNAP chromosome:CEL140:II:3461148:3461676:-1 11/11 None
GENEFINDER00000014802 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3459614:3461676:-1 11/11 None
C16C8.8 ENSEMBL cdna:known chromosome:CEL140:II:3461148:3461676:-1 gene:C16C8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3461146-3461675(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.8
Entrez Gene 182675 Entrez gene
SwissProt P91048 EMBL-EBI
WormBase CE08219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37851 Hypothetical protein C16C8.7 [Caenorhabditis elegans] ref|NP_494551.1| C16C8.7 [Caenorhabditis elegans] 7.0E-85
blast AAB37850 Hypothetical protein C16C8.8 [Caenorhabditis elegans] ref|NP_494552.1| C16C8.8 [Caenorhabditis elegans] 5.0E-61
blast AAB37850 Hypothetical protein C16C8.8 [Caenorhabditis elegans] ref|NP_494552.1| C16C8.8 [Caenorhabditis elegans] 3.0E-58
blast AAB37849 Hypothetical protein C16C8.9 [Caenorhabditis elegans] ref|NP_494553.1| C16C8.9 [Caenorhabditis elegans] 2.0E-16
blast AAB37849 Hypothetical protein C16C8.9 [Caenorhabditis elegans] ref|NP_494553.1| C16C8.9 [Caenorhabditis elegans] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183034_AT
ccctagttcacctgctgcaaatcaatatgctacggagttggctgacaggttctttacaaa
gttcatcaaagcggtgaagtattctgatgttcgtgttatggatagtttattattgtctag
taatgaaaatctctcctctaaaaacatgatccgcgagttctataaatatcctaatacaaa
aatccacgacgcccgttttgtcggacgaaatatcgccacaacggtttttttcccgctcag
tccccacgggtatgacattccatttaaatcagctgattttattctaaagaaacgctttat
gggcgactgggccatcacatctatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTAGTTCACCTGCTGCAAATCAA 19 257 75 Antisense
GCTACGGAGTTGGCTGACAGGTTCT 611 301 103 Antisense
GTATTCTGATGTTCGTGTTATGGAT 612 451 153 Antisense
GTCTAGTAATGAAAATCTCTCCTCT 32 469 189 Antisense
TCTCTCCTCTAAAAACATGATCCGC 67 613 204 Antisense
ACATGATCCGCGAGTTCTATAAATA 437 107 218 Antisense
GACGAAATATCGCCACAACGGTTTT 513 379 278 Antisense
CAGTCCCCACGGGTATGACATTCCA 560 179 312 Antisense
GACATTCCATTTAAATCAGCTGATT 396 371 328 Antisense
GAAACGCTTTATGGGCGACTGGGCC 504 357 363 Antisense
CGACTGGGCCATCACATCTATGGAA 533 249 378 Antisense
Sequence Source Affymetrix Proprietary Database