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[183032_at] 7TM chemoreceptor, srt family

Description C24B9.4 /REP_DB=WormBase Gene ID /WP=CE17446 /TR=O76431 /GB=AAC19254.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 48      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 47.7
(-3)
A 		79.8
(1.7)
A 		88.6
(3)
A 		59.1
(-1.3)
A 		41
B 29.2
(-3)
A 		53.5
(2.3)
A 		39.5
(-0.7)
A 		56.6
(3)
A 		27
C 34.8
(-0.2)
A 		29.3
(-1.2)
A 		52.5
(3)
A 		19.3
(-3)
A 		33
avr 37.2
(-3) 		54.2
(1.4) 		60.2
(3) 		45
(-1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 100.5
(3)
A 		32.1
(-2.2)
A 		52
(-0.7)
A 		21.1
(-3)
A 		69.9
(0.7)
A 		45.7
(-1.1)
A 		79
B 45.5
(0.7)
A 		49.1
(1.4)
A 		57.3
(3)
A 		44
(0.4)
A 		26.4
(-3)
A 		29.4
(-2.4)
A 		31
C 64.6
(1.3)
A 		33.8
(-3)
A 		69.6
(1.9)
A 		77.2
(3)
A 		42.5
(-1.8)
A 		50.8
(-0.6)
A 		43
avr 70.2
(3) 		38.3
(-3) 		59.6
(1) 		47.4
(-1.3) 		46.3
(-1.5) 		42
(-2.3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 17.4
(0.6)
A 		17.3
(0.6)
A 		23.2
(3)
A 		8.7
(-3)
A 		15
B 9.3
(-2.7)
A 		13.2
(3)
A 		9.1
(-3)
A 		12.1
(1.4)
A 		4
C 11.5
(0.3)
A 		8.4
(-1)
A 		18.3
(3)
A 		3.3
(-3)
A 		15
avr 12.7
(0.2) 		13
(0.4) 		16.9
(3) 		8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 18.5
(2)
A 		11.4
(-0.7)
A 		11.3
(-0.7)
A 		5.3
(-3)
A 		21.1
(3)
A 		11.1
(-0.8)
A 		16
B 15.8
(2.4)
A 		16.4
(3)
A 		13.9
(0.4)
A 		11.7
(-1.9)
A 		10.7
(-3)
A 		11
(-2.7)
A 		6
C 24
(3)
A 		10.3
(-3)
A 		17.7
(0.2)
A 		15.5
(-0.7)
A 		13.8
(-1.5)
A 		17
(-0.1)
A 		14
avr 19.4
(3) 		12.7
(-1.7) 		14.3
(-0.6) 		10.8
(-3) 		15.2
(0.1) 		13
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15511
Sequence Type Exemplar sequence
Representative Public ID C24B9.4 NCBI
Target Description C24B9.4 /REP_DB=WormBase Gene ID /WP=CE17446 /TR=O76431 /GB=AAC19254.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071334 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-28) (srt-28) mRNA, complete cds. 11/11 None
SNAP00000038275 ENSEMBL cdna:SNAP chromosome:CEL140:V:2706868:2716334:-1 11/11 None
GENEFINDER00000038290 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2711914:2713446:-1 11/11 None
C24B9.4 ENSEMBL cdna:known chromosome:CEL140:V:2711914:2713446:-1 gene:C24B9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2711913-2713446(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-28
Ensembl C24B9.4
Entrez Gene 182838 Entrez gene
SwissProt O76431 EMBL-EBI
WormBase CE17446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19254 Serpentine receptor, class t protein 28 [Caenorhabditis elegans] ref|NP_503735.1| Serpentine Receptor, class T family member (srt-28) [Caenorhabditis elegans] 0.0
blast AAQ91906 Hypothetical protein C24B9.3b [Caenorhabditis elegans] ref|NP_001023672.1| C24B9.3b [Caenorhabditis elegans] 0.0
blast AAC19251 Hypothetical protein C24B9.3a [Caenorhabditis elegans] ref|NP_001023671.1| C24B9.3a [Caenorhabditis elegans] 0.0
blast CAE62537 Hypothetical protein CBG06646 [Caenorhabditis briggsae] 1.0E-173
blast CAE62538 Hypothetical protein CBG06647 [Caenorhabditis briggsae] 1.0E-134
blast CAE62539 Hypothetical protein CBG06648 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 1.79999995231628
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503735.1 7 43-60,73-95,110-132,153-175,202-224,245-266,276-298
C24B9.4 7 43-60,73-95,110-132,153-175,202-224,245-266,276-298
SNAP00000038275 7 70-87,100-122,137-159,180-202,229-251,272-293,303-325
GENEFINDER00000038290 7 43-60,73-95,110-132,153-175,202-224,245-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:183032_AT
gatgctgccgattatgtacgggctttattttgtgttcttcacaaagcctgtgatgttttc
ttcaaagtatatgacatggttctttgaccccctgatttttgagggacgtggcaatgagta
cgccaacattccccatggatttaacaacctactcgtcgtaggtatcacttgcctgctcta
cacctccctttgttgtgtactcggggaaaagttcaatatgatcgaggacactactaattc
gaaaatgaagaatatgagtctccaaatcttcttccaatccgcactgatctgcgccatcaa
ccaggtggcgtccatcatctacgtcatcatgaacttcgtcgatgtcccactgtggatcat
catgatgggacatgtactctggcaatttggacatggtgcacctgtcctgatctacctgtg
cttaaaccggacattgagaagtgggctgctcaggagattggggttgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTGCCGATTATGTACGGGCTT 388 413 480 Antisense
CGCCAACATTCCCCATGGATTTAAC 28 257 600 Antisense
TGGATTTAACAACCTACTCGTCGTA 311 549 615 Antisense
CTCGTCGTAGGTATCACTTGCCTGC 66 231 631 Antisense
AATATGAGTCTCCAAATCTTCTTCC 438 173 730 Antisense
TGATCTGCGCCATCAACCAGGTGGC 455 565 764 Antisense
TCATGAACTTCGTCGATGTCCCACT 254 621 806 Antisense
GATGGGACATGTACTCTGGCAATTT 270 409 843 Antisense
TGGACATGGTGCACCTGTCCTGATC 642 545 867 Antisense
TCCTGATCTACCTGTGCTTAAACCG 165 593 884 Antisense
GCTGCTCAGGAGATTGGGGTTGCGG 306 297 924 Antisense
Sequence Source Affymetrix Proprietary Database