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[183031_at] F-box protein

Description B0391.11 /REP_DB=WormBase Gene ID /WP=CE24768 /TR=Q9NDU9 /GB=CAB76407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 142.2
(3)
P 		74.9
(-0.1)
A 		13.4
(-3)
A 		110.5
(1.5)
A 		129
B 104.8
(3)
P 		81.9
(1.1)
A 		42.5
(-2.2)
A 		32.8
(-3)
A 		72
C 110.3
(3)
P 		36
(-3)
A 		40
(-2.7)
A 		64.5
(-0.7)
P 		74
avr 119.1
(3) 		64.3
(-0.8) 		32
(-3) 		69.3
(-0.4) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 107.3
(3)
P 		80
(1)
M 		67.9
(0.1)
P 		40.1
(-2)
A 		26.6
(-3)
A 		26.5
(-3)
A 		81
B 122.9
(3)
P 		84.6
(0.8)
P 		62.3
(-0.4)
A 		50.5
(-1.1)
A 		33.8
(-2)
A 		16.8
(-3)
A 		106
C 70.6
(1.2)
P 		87.8
(3)
P 		67.6
(0.8)
A 		87.5
(3)
P 		47.3
(-1.3)
A 		31.9
(-3)
A 		56
avr 100.3
(3) 		84.1
(1.7) 		65.9
(0.3) 		59.4
(-0.3) 		35.9
(-2.1) 		25.1
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 51.8
(3)
P 		16.3
(-1.4)
A 		3.5
(-3)
A 		16.2
(-1.4)
A 		48
B 33.4
(3)
P 		20.2
(0)
A 		9.8
(-2.4)
A 		7
(-3)
A 		26
C 36.5
(3)
P 		10.4
(-3)
A 		14
(-2.2)
A 		10.9
(-2.9)
P 		26
avr 40.6
(3) 		15.6
(-1.8) 		9.1
(-3) 		11.4
(-2.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.8
(0.7)
P 		28.4
(3)
M 		14.8
(-0.7)
P 		10.2
(-2)
A 		8
(-2.6)
A 		6.4
(-3)
A 		22
B 42.8
(3)
P 		28.2
(0.6)
P 		15.1
(-1.5)
A 		13.4
(-1.8)
A 		13.7
(-1.8)
A 		6.2
(-3)
A 		37
C 26.2
(2.8)
P 		26.8
(3)
P 		17.2
(-0.6)
A 		17.6
(-0.4)
P 		15.3
(-1.3)
A 		10.7
(-3)
A 		16
avr 29.6
(3) 		27.8
(2.5) 		15.7
(-0.8) 		13.7
(-1.4) 		12.3
(-1.8) 		7.8
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12734
Sequence Type Exemplar sequence
Representative Public ID B0391.11 NCBI
Target Description B0391.11 /REP_DB=WormBase Gene ID /WP=CE24768 /TR=Q9NDU9 /GB=CAB76407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074477 NCBI Caenorhabditis elegans B0391.11 (B0391.11) mRNA, complete cds. 11/11 A 
SNAP00000015399 ENSEMBL cdna:SNAP chromosome:CEL140:V:15602984:15604929:-1 11/11 None
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 11/11 None
B0391.11 ENSEMBL cdna:known chromosome:CEL140:V:15602984:15604929:-1 gene:B0391.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075670 1/11 Cross Hyb Matching Probes A B 
SNAP00000022308 1/11 Cross Hyb Matching Probes None
Y73B3A.15 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:117387-119143(+) 91.29 91.29
chrV:15602983-15604929(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box protein
Ensembl B0391.11
Entrez Gene 181956 Entrez gene
SwissProt Q9NDU9 EMBL-EBI
WormBase CE24768 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76407 Hypothetical protein B0391.11 [Caenorhabditis elegans] ref|NP_506878.1| B0391.11 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:183031_AT
tcatcttaaaattttcggcgtcacattttcaagtgctgttggggaagaagcccgtcagaa
ggtgatcgagacggttggaactttgaaatggccgaatttaaaaactgtatttttcaatgg
aatccatcaatctgaaatcaagcccatgattgcttgtttcaattcagaaacaatcgagca
cattattctagacgtttctcgagattcaagtgattttgagttgaatgcagatgtctatga
gtcggcgcaatggaaacatgccaaaattattcagatttgcggggattgcgaacttttaat
tccttttgcaaacttggctcatttggtggcattcgagattccgcttcagtcgtttacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTTAAAATTTTCGGCGTCACA 277 615 543 Antisense
AGCCCATGATTGCTTGTTTCAATTC 176 83 683 Antisense
AGCACATTATTCTAGACGTTTCTCG 144 77 719 Antisense
GACGTTTCTCGAGATTCAAGTGATT 634 375 733 Antisense
GCAGATGTCTATGAGTCGGCGCAAT 512 311 769 Antisense
GTCGGCGCAATGGAAACATGCCAAA 127 471 783 Antisense
TCAGATTTGCGGGGATTGCGAACTT 42 619 813 Antisense
GATTGCGAACTTTTAATTCCTTTTG 112 433 826 Antisense
TTAATTCCTTTTGCAAACTTGGCTC 235 681 838 Antisense
ATTTGGTGGCATTCGAGATTCCGCT 600 17 863 Antisense
AGATTCCGCTTCAGTCGTTTACAAA 224 59 878 Antisense
Sequence Source Affymetrix Proprietary Database