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[183030_at]

Description C16C8.7 /REP_DB=WormBase Gene ID /WP=CE08218 /TR=P91049 /GB=AAB37851.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3
(-3)
A 		8.2
(3)
A 		6.5
(1)
A 		5.4
(-0.2)
A 		5
B 5.5
(-2.6)
A 		3.7
(-3)
A 		3.9
(-3)
A 		30
(3)
A 		26
C 5.7
(0.7)
A 		3
(-3)
A 		7.4
(3)
A 		5.5
(0.4)
A 		4
avr 4.7
(-3) 		5
(-2.8) 		5.9
(-2.2) 		13.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 6.3
(-2.2)
A 		1.9
(-3)
A 		6.4
(-2.2)
A 		35.7
(3)
A 		3.7
(-2.7)
A 		2.3
(-2.9)
A 		34
B 4.2
(-2.6)
A 		22.2
(3)
A 		9.1
(-1.1)
A 		3.5
(-2.8)
A 		2.9
(-3)
A 		14
(0.5)
A 		19
C 5.2
(-2.6)
A 		50.5
(3)
A 		21.6
(-0.6)
A 		7.8
(-2.3)
A 		2.2
(-3)
A 		7.6
(-2.3)
A 		48
avr 5.2
(-2.4) 		24.9
(3) 		12.4
(-0.4) 		15.7
(0.5) 		2.9
(-3) 		8
(-1.6) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-1.2)
A 		1.8
(3)
A 		1.7
(2.4)
A 		0.8
(-3)
A 		1
B 1.8
(-2)
A 		0.9
(-3)
A 		0.9
(-3)
A 		6.4
(3)
A 		6
C 1.9
(0.7)
A 		0.8
(-3)
A 		2.6
(3)
A 		0.9
(-2.7)
A 		2
avr 1.6
(-1.4) 		1.2
(-3) 		1.7
(-1) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.2
(-2.6)
A 		0.7
(-2.9)
A 		1.4
(-2.4)
A 		9.1
(3)
A 		1.1
(-2.6)
A 		0.6
(-3)
A 		9
B 1.4
(-2.5)
A 		7.4
(3)
A 		2.2
(-1.8)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		5.2
(1)
A 		7
C 1.9
(-2.5)
A 		15.4
(3)
A 		5.5
(-1)
A 		1.6
(-2.6)
A 		0.7
(-3)
A 		2.5
(-2.3)
A 		15
avr 1.5
(-2.6) 		7.8
(3) 		3
(-1.2) 		3.9
(-0.4) 		1
(-3) 		2.8
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5781
Sequence Type Exemplar sequence
Representative Public ID C16C8.7 NCBI
Target Description C16C8.7 /REP_DB=WormBase Gene ID /WP=CE08218 /TR=P91049 /GB=AAB37851.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062150 NCBI Caenorhabditis elegans C16C8.7 (C16C8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000014802 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3459614:3461676:-1 10/11 None
C16C8.7 ENSEMBL cdna:known chromosome:CEL140:II:3459614:3460309:-1 gene:C16C8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014786 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3459612-3460308(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.7
Entrez Gene 182674 Entrez gene
SwissProt P91049 EMBL-EBI
WormBase CE08218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37851 Hypothetical protein C16C8.7 [Caenorhabditis elegans] ref|NP_494551.1| C16C8.7 [Caenorhabditis elegans] 4.0E-99
blast AAB37851 Hypothetical protein C16C8.7 [Caenorhabditis elegans] ref|NP_494551.1| C16C8.7 [Caenorhabditis elegans] 7.0E-85
blast AAB37850 Hypothetical protein C16C8.8 [Caenorhabditis elegans] ref|NP_494552.1| C16C8.8 [Caenorhabditis elegans] 3.0E-58
blast AAB37849 Hypothetical protein C16C8.9 [Caenorhabditis elegans] ref|NP_494553.1| C16C8.9 [Caenorhabditis elegans] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183030_AT
gaatttagcacagtccttggctcaaaatgctcaaaaatgtgaaatttctatacataaaac
agctccagtcttcccggttcccagaagcccttttctctcgataattcgattagcttctgg
gcatatattcccctccatctcacccccaataccattctccaaaatgcgtctcctcattct
ccatctcgccgtttttggtactttccagcttggctctgctgacaacacggaagccaagga
attcattagacgtctcaagtatgcggtaaaccatgctgattctgcgacagttgctctttt
ggtttctaaagatgttgaacacccggatttgatcatttcactttttaaattataccaccc
gatgtccatcgaaatgacaaagtttgataagaaacttctggaaatgcacgtggaagttaa
tttcgttagagctcccggacattacgtggttgttaagtttattttgcaacttaatccgaa
aaccttctactggcaagttcgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTAGCACAGTCCTTGGCTCAA 545 325 18 Antisense
TAGCTTCTGGGCATATATTCCCCTC 513 645 128 Antisense
TACCATTCTCCAAAATGCGTCTCCT 107 651 167 Antisense
TTTCCAGCTTGGCTCTGCTGACAAC 448 669 219 Antisense
GACGTCTCAAGTATGCGGTAAACCA 26 377 266 Antisense
GGTAAACCATGCTGATTCTGCGACA 691 503 282 Antisense
GAACACCCGGATTTGATCATTTCAC 80 351 334 Antisense
TAAATTATACCACCCGATGTCCATC 619 641 363 Antisense
TTAATTTCGTTAGAGCTCCCGGACA 94 679 434 Antisense
GCTCCCGGACATTACGTGGTTGTTA 160 299 448 Antisense
AACCTTCTACTGGCAAGTTCGACAC 467 145 498 Antisense
Sequence Source Affymetrix Proprietary Database