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[183029_s_at]

Description F49E8.3 /REP_DB=WormBase Gene ID /WP=CE10790 /TR=Q20627 /GB=AAB03152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 35      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2510
1 2 3 4 range
A 1865.7
(-1.6)
P 		3165.6
(1.5)
P 		3781.9
(3)
P 		1272.1
(-3)
P 		2510
B 1853.1
(-3)
P 		2884.8
(0.5)
P 		3615.9
(3)
P 		2090
(-2.2)
P 		1763
C 1652.5
(-2.7)
P 		2936
(1.7)
P 		3329.8
(3)
P 		1562.8
(-3)
P 		1767
avr 1790.4
(-2.5) 		2995.5
(1.2) 		3575.9
(3) 		1641.6
(-3) 		1934

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3247
1 2 3 4 5 6 range
A 1812.3
(-3)
P 		3572.4
(1.3)
P 		3341.7
(0.7)
P 		4288.7
(3)
P 		3410.5
(0.9)
P 		3431.7
(0.9)
P 		2476
B 2085.9
(-3)
P 		2824
(-1.2)
P 		3849.7
(1.3)
P 		4528.2
(3)
P 		3469.8
(0.4)
P 		2620.6
(-1.7)
P 		2442
C 2250.8
(-3)
P 		2624.7
(-2.2)
P 		5059.7
(3)
P 		4600.8
(2)
P 		3304.7
(-0.7)
P 		2657.8
(-2.1)
P 		2809
avr 2049.7
(-3) 		3007
(-0.6) 		4083.7
(2) 		4472.6
(3) 		3395
(0.3) 		2903.4
(-0.9) 		2423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 974
1 2 3 4 range
A 679.3
(0.7)
P 		687.2
(0.7)
P 		988.6
(3)
P 		186.2
(-3)
P 		802
B 591
(-0.8)
P 		712.5
(1.1)
P 		837.9
(3)
P 		445.4
(-3)
P 		393
C 547
(-1.1)
P 		844.1
(0.9)
P 		1160.5
(3)
P 		263.5
(-3)
P 		897
avr 605.8
(-0.4) 		747.9
(0.9) 		995.7
(3) 		298.4
(-3) 		697

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1076
1 2 3 4 5 6 range
A 334.1
(-3)
P 		1270.5
(3)
P 		727.8
(-0.5)
P 		1087.7
(1.8)
P 		1029.1
(1.5)
P 		835.5
(0.2)
P 		936
B 725.8
(-3)
P 		940
(-1.1)
P 		934.8
(-1.2)
P 		1199.4
(1.2)
P 		1409.7
(3)
P 		977.2
(-0.8)
P 		684
C 834.3
(-2.6)
P 		800.9
(-3)
P 		1287.8
(3)
P 		925.2
(-1.5)
P 		1069.4
(0.3)
P 		889.7
(-1.9)
P 		487
avr 631.4
(-3) 		1003.8
(1.2) 		983.5
(0.9) 		1070.8
(1.9) 		1169.4
(3) 		900.8
(0) 		538
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183029_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8539
Sequence Type Exemplar sequence
Representative Public ID F49E8.3 NCBI
Target Description F49E8.3 /REP_DB=WormBase Gene ID /WP=CE10790 /TR=Q20627 /GB=AAB03152.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028038(11), NM_001028039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028038 NCBI Caenorhabditis elegans Puromycin-sensitive AMinopeptidase family member (pam-1) (pam-1) mRNA, complete cds. 11/11 None
NM_001028039 NCBI Caenorhabditis elegans Puromycin-sensitive AMinopeptidase family member (pam-1) (pam-1) mRNA, complete cds. 11/11 None
SNAP00000021358 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7544124:7547100:-1 11/11 None
GENEFINDER00000021371 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7544124:7547100:-1 11/11 None
F49E8.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:7543945:7547101:-1 gene:F49E8.3 11/11 None
F49E8.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:7543970:7547101:-1 gene:F49E8.3 11/11 None
F49E8.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:7543975:7547105:-1 gene:F49E8.3 11/11 None
F49E8.3.4 ENSEMBL cdna:known chromosome:CEL140:IV:7543977:7550796:-1 gene:F49E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7544129-7547106(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49E8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY44009 Puromycin-sensitive aminopeptidase protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023210.1| Puromycin-sensitive AMinopeptidase family member (pam-1) [Caenorhabditis elegans] 0.0
blast AAB03152 Puromycin-sensitive aminopeptidase protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023209.1| Puromycin-sensitive AMinopeptidase family member (pam-1) [Caenorhabditis elegans] 0.0
blast CAE61909 Hypothetical protein CBG05905 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183029_S_AT
gccaattcatccagacattcggctagccactttcggtgttgttgctcggtatggaggaaa
ggaaggattcgataagctaatgaatctccgtgaaactaccacattccaagagatcgaaag
acaaaccatggtagcaatgtctcaaactccggaggagtcacttcttgcccaacttttcga
atatggatttgagaagaacaaggtccgtccacaagatcagctgtatctcttcctcggaac
tggagcgactcatatgggacagcaatacgcgtggaaatatttctgcgagcacattaaaga
gttcctcgacaaatacggaggtgccaactcgagtctcttccagcgatgcctcaagtttgc
tggagaaagttttggaaacgaaaaacgagctgtcgagtttcaagatttcttctgcaattg
caatgttctcagcgatacggatcgccagactttggccagacccatcggacagaccgtcga
agctatccgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAATTCATCCAGACATTCGGCTA 53 279 2109 Antisense
GCTAGCCACTTTCGGTGTTGTTGCT 187 303 2130 Antisense
ATCTCCGTGAAACTACCACATTCCA 594 31 2192 Antisense
TGGTAGCAATGTCTCAAACTCCGGA 50 553 2237 Antisense
AACTCCGGAGGAGTCACTTCTTGCC 653 141 2253 Antisense
ACTTCTTGCCCAACTTTTCGAATAT 113 103 2268 Antisense
GTCCGTCCACAAGATCAGCTGTATC 195 477 2311 Antisense
GTATCTCTTCCTCGGAACTGGAGCG 508 453 2331 Antisense
ATACGGAGGTGCCAACTCGAGTCTC 426 7 2421 Antisense
CGGATCGCCAGACTTTGGCCAGACC 656 243 2546 Antisense
CAGACCGTCGAAGCTATCCGTTTGA 239 203 2578 Antisense
Sequence Source Affymetrix Proprietary Database