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[183027_at]

Description R07C3.5 /REP_DB=WormBase Gene ID /WP=CE12530 /TR=O16774 /GB=AAB66235.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 14.2
(-3)
A 		37.7
(3)
A 		25.7
(-0.1)
A 		28.2
(0.6)
A 		24
B 36.1
(-2.3)
A 		44.5
(0.6)
A 		33.9
(-3)
A 		51.7
(3)
M 		18
C 27.3
(-3)
A 		30.8
(-2.6)
A 		34.5
(-2.1)
A 		75.8
(3)
A 		49
avr 25.9
(-3) 		37.7
(-0.3) 		31.4
(-1.7) 		51.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 27.6
(-0.9)
A 		26.7
(-1)
A 		51.1
(1.3)
A 		5.4
(-3)
A 		27.7
(-0.9)
A 		68.9
(3)
P 		64
B 26.6
(1.5)
A 		26.5
(1.5)
A 		3.3
(-3)
A 		21
(0.4)
A 		11.4
(-1.4)
A 		34.1
(3)
P 		31
C 18.4
(-1.6)
M 		23.1
(-1.2)
A 		2.8
(-3)
A 		3
(-3)
A 		21.5
(-1.3)
A 		69.4
(3)
P 		67
avr 24.2
(-1.2) 		25.4
(-1) 		19.1
(-1.8) 		9.8
(-3) 		20.2
(-1.7) 		57.5
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.2
(-1.4)
A 		8.2
(3)
A 		6.7
(0.8)
A 		4.1
(-3)
A 		4
B 11.5
(3)
A 		11
(2.2)
A 		7.8
(-3)
A 		11
(2.2)
M 		4
C 9
(-2.8)
A 		8.9
(-3)
A 		12
(1.8)
A 		12.8
(3)
A 		4
avr 8.6
(-3) 		9.4
(3) 		8.8
(-1.5) 		9.3
(2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 5.1
(-1.6)
A 		9.5
(0.2)
A 		11.1
(0.8)
A 		1.4
(-3)
A 		8.4
(-0.3)
A 		16.8
(3)
P 		15
B 9.3
(1.3)
A 		8.8
(1)
A 		0.8
(-3)
A 		5.6
(-0.6)
A 		4.6
(-1.1)
A 		12.7
(3)
P 		12
C 6.8
(-1.4)
M 		7
(-1.3)
A 		0.7
(-3)
A 		0.6
(-3)
A 		6.9
(-1.3)
A 		23.2
(3)
P 		23
avr 7.1
(-1.2) 		8.4
(-0.7) 		4.2
(-2.3) 		2.5
(-3) 		6.6
(-1.4) 		17.6
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4430
Sequence Type Exemplar sequence
Representative Public ID R07C3.5 NCBI
Target Description R07C3.5 /REP_DB=WormBase Gene ID /WP=CE12530 /TR=O16774 /GB=AAB66235.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061454 NCBI Caenorhabditis elegans R07C3.5 (R07C3.5) mRNA, complete cds. 11/11 None
SNAP00000022243 ENSEMBL cdna:SNAP chromosome:CEL140:II:931190:936732:1 11/11 None
GENEFINDER00000022247 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:930718:932300:1 11/11 None
R07C3.5 ENSEMBL cdna:known chromosome:CEL140:II:931529:932300:1 gene:R07C3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:931527-932299(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.5
Entrez Gene 187667 Entrez gene
SwissProt O16774 EMBL-EBI
WormBase CE12530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66234 Hypothetical protein R07C3.4 [Caenorhabditis elegans] ref|NP_493856.1| R07C3.4 [Caenorhabditis elegans] 0.0
blast CAA94298 Hypothetical protein R09E10.3 [Caenorhabditis elegans] ref|NP_501893.1| R09E10.3 [Caenorhabditis elegans] 0.0
blast CAE60718 Hypothetical protein CBG04390 [Caenorhabditis briggsae] 0.0
blast AAB66235 Hypothetical protein R07C3.5 [Caenorhabditis elegans] ref|NP_493855.1| R07C3.5 [Caenorhabditis elegans] 1.0E-117
blast AAB66243 Hypothetical protein R07C3.14 [Caenorhabditis elegans] ref|NP_493854.1| R07C3.14 [Caenorhabditis elegans] 2.0E-50
blast AAB66243 Hypothetical protein R07C3.14 [Caenorhabditis elegans] ref|NP_493854.1| R07C3.14 [Caenorhabditis elegans] 6.0E-50
blast AAB66232 Hypothetical protein R07C3.2 [Caenorhabditis elegans] ref|NP_493858.1| R07C3.2 [Caenorhabditis elegans] 4.0E-28
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.5E-78
Sequence
Target Sequence 
>C. ELEGANS:183027_AT
aacagatgctgggaggccggcaggttatcgcaacacatacttgcattggaatggatactg
atgcttttcaaaatgggaggaatcttgtcaccgatactttggagatttacacaggagatt
tacgcaaaactcttgacactctctcctcaatatttcacccgtcaagtttcccattgaaat
ctttgagaatacttgacaatgcagacttcaagcaccctataatccaaggttccctgctcc
tggttgttccgaatactgagaacatgcatctgatatctaataaaagagtacacgcgcgat
atttttactacaaagatgacgtcgactttattattaataaatggctggatgatggaaaag
aagctggaacccatttttctattggaatgtttttgactgaagaccatgtaaaagagaagt
atgaagagtttttgagcacgtttgaagagagagtttcgtggagaacaaattatccgccat
gctttgcaatcaatatcgacaacttctctgagattgtcatcggctacgaggaattccaac
agatttccacaccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGATGCTGGGAGGCCGGCAGGT 14 135 29 Antisense
CCGGCAGGTTATCGCAACACATACT 673 265 45 Antisense
TACGCAAAACTCTTGACACTCTCTC 381 649 149 Antisense
TCAATATTTCACCCGTCAAGTTTCC 685 633 175 Antisense
GACAATGCAGACTTCAAGCACCCTA 380 365 223 Antisense
AGCACCCTATAATCCAAGGTTCCCT 222 71 239 Antisense
TACACGCGCGATATTTTTACTACAA 622 643 317 Antisense
AATTATCCGCCATGCTTTGCAATCA 658 175 496 Antisense
AACTTCTCTGAGATTGTCATCGGCT 635 137 529 Antisense
GTCATCGGCTACGAGGAATTCCAAC 82 467 544 Antisense
AATTCCAACAGATTTCCACACCGGA 434 177 560 Antisense
Sequence Source Affymetrix Proprietary Database