[Home] | [Total List]

[183026_at]

Description VM106R.1 /REP_DB=WormBase Gene ID /WP=CE18301 /TR=Q9XXA3 /GB=CAA20329.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 04      4grp_total > 46      6grp_highest_sub > De      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 452.7
(3)
P 		306.2
(-2.2)
P 		282.2
(-3)
P 		288.7
(-2.8)
P 		171
B 376.3
(3)
P 		359.2
(2.1)
P 		260.6
(-3)
P 		336.8
(1)
P 		116
C 471
(3)
P 		356.8
(-0.1)
P 		294.5
(-1.7)
P 		247.8
(-3)
P 		223
avr 433.3
(3) 		340.7
(-0.6) 		279.1
(-3) 		291.1
(-2.5) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 317.4
(0.6)
P 		332.4
(1.2)
P 		376.2
(3)
P 		250
(-2.1)
P 		318.3
(0.7)
P 		226.9
(-3)
P 		149
B 378.3
(3)
P 		375.2
(2.9)
P 		263.8
(-1.8)
P 		263
(-1.8)
P 		276.4
(-1.2)
P 		234.2
(-3)
P 		144
C 407.6
(2.8)
P 		413.9
(3)
P 		290.2
(-0.7)
P 		330.9
(0.5)
P 		255.4
(-1.8)
P 		214.6
(-3)
P 		199
avr 367.8
(2.8) 		373.8
(3) 		310.1
(0.4) 		281.3
(-0.7) 		283.4
(-0.7) 		225.2
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 164.8
(3)
P 		66.5
(-1.8)
P 		73.8
(-1.5)
P 		42.3
(-3)
P 		123
B 120
(3)
P 		88.7
(-0.2)
P 		60.4
(-3)
P 		71.8
(-1.9)
P 		60
C 155.9
(3)
P 		102.6
(0.2)
P 		102.7
(0.2)
P 		41.8
(-3)
P 		114
avr 146.9
(3) 		85.9
(-0.9) 		79
(-1.3) 		52
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 58.5
(-2.7)
P 		118.2
(3)
P 		81.9
(-0.5)
P 		63.4
(-2.2)
P 		96.1
(0.9)
P 		55.2
(-3)
P 		63
B 131.6
(3)
P 		124.9
(2.4)
P 		64
(-3)
P 		69.7
(-2.5)
P 		112.3
(1.3)
P 		87.3
(-0.9)
P 		68
C 151.1
(3)
P 		126.3
(1.2)
P 		73.9
(-2.5)
P 		66.5
(-3)
P 		82.7
(-1.9)
P 		71.8
(-2.6)
P 		85
avr 113.7
(2) 		123.1
(3) 		73.3
(-2.3) 		66.5
(-3) 		97
(0.2) 		71.4
(-2.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3458
Sequence Type Exemplar sequence
Representative Public ID VM106R.1 NCBI
Target Description VM106R.1 /REP_DB=WormBase Gene ID /WP=CE18301 /TR=Q9XXA3 /GB=CAA20329.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000022230 ENSEMBL cdna:SNAP chromosome:CEL140:II:10828217:10829016:-1 11/11 None
GENEFINDER00000022231 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10827785:10829016:-1 11/11 None
VM106R.1 ENSEMBL cdna:pseudogene chromosome:CEL140:II:10827785:10829308:-1 gene:VM106R.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10828213-10829013(-) 100.0 100.0
Public Domain and Genome References
Ensembl VM106R.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26019 hypothetical protein VM106R.1 - Caenorhabditis elegans 1.0E-104
blast CAE59600 Hypothetical protein CBG03007 [Caenorhabditis briggsae] 5.0E-93
blast T26019 hypothetical protein VM106R.1 - Caenorhabditis elegans 7.0E-80
blast CAE59600 Hypothetical protein CBG03007 [Caenorhabditis briggsae] 2.0E-68
blast XP_794204 PREDICTED: similar to CG10830-PA [Strongylocentrotus purpuratus] 3.0E-43
blast XP_794204 PREDICTED: similar to CG10830-PA [Strongylocentrotus purpuratus] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.9E-22
Sequence
Target Sequence 
>C. ELEGANS:183026_AT
atgtatacaaccactcggagcacgttgagtaaagaaaccgacacattactagcaaatatt
gcgtccggctctttatcagaagatgagcaagctaacgttgtcacactgccagatggaacc
ctattcgttgatcgagacggaccactattcgcctatgtgctgcactttttacgaaccgac
aaactatcccttccagagcagtttcgtgaagttgctcgactgaaagatgaagcagacttt
tatcgcctcgaacgattctcaacacttctatccaacgcctcatcaatttctcctcgtccg
cgcactgcgaatgggtataacaccattacgtctggtgccgagacgggcggctacattacc
cttggctaccggggcacatttgccttcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATACAACCACTCGGAGCACGT 289 47 58 Antisense
TGCGTCCGGCTCTTTATCAGAAGAT 82 581 117 Antisense
GCAAGCTAACGTTGTCACACTGCCA 603 319 144 Antisense
ACTGCCAGATGGAACCCTATTCGTT 478 95 162 Antisense
TGATCGAGACGGACCACTATTCGCC 675 565 186 Antisense
TATGTGCTGCACTTTTTACGAACCG 565 655 211 Antisense
ATCCCTTCCAGAGCAGTTTCGTGAA 565 37 243 Antisense
TGAAGCAGACTTTTATCGCCTCGAA 510 573 285 Antisense
GAACGATTCTCAACACTTCTATCCA 707 347 307 Antisense
TCGTCCGCGCACTGCGAATGGGTAT 633 599 351 Antisense
TACCGGGGCACATTTGCCTTCGGAC 131 647 424 Antisense
Sequence Source Affymetrix Proprietary Database